2IO7A

E. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and amppnp
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
606
structure length
587
Chain Sequence
APFGTLLGYAPGGVAIYSSDYRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dual binding sites for translocation catalysis by Escherichia coli glutathionylspermidine synthetase
pubmed doi rcsb
molecule tags Ligase, hydrolase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 160
structure length 587
sequence length 606
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2io7A01
3A30A 3O98A 4JXBA 4EQ8A 2VPMA 4FQBA 3VPJA 4CGKA 4FDYA 4CSHA 3A2ZA 2IO9A 2IO7A 3PBIA 4Q4TA 3I86A 2VPSA 4HZBA 3GT2A 2IO8A 4EQAA 4R0KA 4F0WA 4F0VA 4F4MA 2FG0A 3PVQA 2IF6A 3KW0A 4OLKA 2LRJA 4Q4NA 3H41A 4HPEA 4LJ1A 3NE0A 2IOBA 2K3AA 2K1GA 4FGDA 2VOBA 4FGIA 4FQAA 4EOBA 2XIVA 3S0QA 4HZ9A 3A2YA 4CT3A 4Q4GX 2IOAA 3PBCA 2HBWA 3VPIA 4FGEA 3M1UA 3NPFA 2EVRA
chains in the Genus database with same CATH superfamily
3A30A 3O98A 4JXBA 4EQ8A 4J32A 2VPMA 4FQBA 4JURA 3VPJA 4CGKA 4FDYA 4CSHA 3A2ZA 2IO9A 2IO7A 3PBIA 4HFKA 4Q4TA 4HFFA 3I86A 2VPSA 4HZBA 3GT2A 4HFLA 2IO8A 4EQAA 4R0KA 4F0WA 4F0VA 4F4MA 4J30A 2FG0A 3PVQA 2IF6A 2WP7A 3KW0A 4OLKA 2LRJA 4Q4NA 3H41A 4HPEA 4LJ1A 3NE0A 2IOBA 2K3AA 2K1GA 4FGDA 2VOBA 4FGIA 4FQAA 4EOBA 2XIVA 3S0QA 4HZ9A 3A2YA 4CT3A 4Q4GX 2IOAA 3PBCA 2HBWA 3VPIA 4FGEA 3M1UA 3EBQA 3NPFA 2EVRA
chains in the Genus database with same CATH topology
3A30A 3O98A 4JXBA 4EQ8A 2VPMA 4FQBA 3VPJA 4CGKA 4FDYA 4CSHA 3A2ZA 2IO9A 2IO7A 3PBIA 4Q4TA 3I86A 2VPSA 4HZBA 3GT2A 2IO8A 4EQAA 4R0KA 4F0WA 4F0VA 4F4MA 2FG0A 3PVQA 2IF6A 3KW0A 4OLKA 2LRJA 4Q4NA 3H41A 4HPEA 4LJ1A 3NE0A 2IOBA 2K3AA 2K1GA 4FGDA 2VOBA 4FGIA 4FQAA 4EOBA 2XIVA 3S0QA 4HZ9A 3A2YA 4CT3A 4Q4GX 2IOAA 3PBCA 2HBWA 3VPIA 4FGEA 3M1UA 3NPFA 2EVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A30 A;  3O98 A;  4JXB A;  4EQ8 A;  2VPM A;  4FQB A;  3VPJ A;  4CGK A;  4FDY A;  4CSH A;  3A2Z A;  2IO9 A;  2IO7 A;  3PBI A;  4Q4T A;  3I86 A;  2VPS A;  4HZB A;  3GT2 A;  2IO8 A;  4EQA A;  4R0K A;  4F0W A;  4F0V A;  4F4M A;  2FG0 A;  3PVQ A;  2IF6 A;  3KW0 A;  4OLK A;  2LRJ A;  4Q4N A;  3H41 A;  4HPE A;  4LJ1 A;  3NE0 A;  2IOB A;  2K3A A;  2K1G A;  4FGD A;  2VOB A;  4FGI A;  4FQA A;  4EOB A;  2XIV A;  3S0Q A;  4HZ9 A;  3A2Y A;  4CT3 A;  4Q4G X;  2IOA A;  3PBC A;  2HBW A;  3VPI A;  4FGE A;  3M1U A;  3NPF A;  2EVR A; 
#chains in the Genus database with same CATH topology
 3A30 A;  3O98 A;  4JXB A;  4EQ8 A;  4J32 A;  2VPM A;  4FQB A;  4JUR A;  3VPJ A;  4CGK A;  4FDY A;  4CSH A;  3A2Z A;  2IO9 A;  2IO7 A;  3PBI A;  4HFK A;  4Q4T A;  4HFF A;  3I86 A;  2VPS A;  4HZB A;  3GT2 A;  4HFL A;  2IO8 A;  4EQA A;  4R0K A;  4F0W A;  4F0V A;  4F4M A;  4J30 A;  2FG0 A;  3PVQ A;  2IF6 A;  2WP7 A;  3KW0 A;  4OLK A;  2LRJ A;  4Q4N A;  3H41 A;  4HPE A;  4LJ1 A;  3NE0 A;  2IOB A;  2K3A A;  2K1G A;  4FGD A;  2VOB A;  4FGI A;  4FQA A;  4EOB A;  2XIV A;  3S0Q A;  4HZ9 A;  3A2Y A;  4CT3 A;  4Q4G X;  2IOA A;  3PBC A;  2HBW A;  3VPI A;  4FGE A;  3M1U A;  3EBQ A;  3NPF A;  2EVR A; 
#chains in the Genus database with same CATH homology
 3A30 A;  3O98 A;  4JXB A;  4EQ8 A;  2VPM A;  4FQB A;  3VPJ A;  4CGK A;  4FDY A;  4CSH A;  3A2Z A;  2IO9 A;  2IO7 A;  3PBI A;  4Q4T A;  3I86 A;  2VPS A;  4HZB A;  3GT2 A;  2IO8 A;  4EQA A;  4R0K A;  4F0W A;  4F0V A;  4F4M A;  2FG0 A;  3PVQ A;  2IF6 A;  3KW0 A;  4OLK A;  2LRJ A;  4Q4N A;  3H41 A;  4HPE A;  4LJ1 A;  3NE0 A;  2IOB A;  2K3A A;  2K1G A;  4FGD A;  2VOB A;  4FGI A;  4FQA A;  4EOB A;  2XIV A;  3S0Q A;  4HZ9 A;  3A2Y A;  4CT3 A;  4Q4G X;  2IOA A;  3PBC A;  2HBW A;  3VPI A;  4FGE A;  3M1U A;  3NPF A;  2EVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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