4FQBA

Crystal structure of toxic effector tse1 in complex with immune protein tsi1
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
146
structure length
146
Chain Sequence
LDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title structural basis of Tse1 in complex with Tsi1
rcsb
molecule tags Toxin/immune system
source organism Pseudomonas aeruginosa pao1
molecule keywords toxic effector Tse1
total genus 44
structure length 146
sequence length 146
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2012-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4fqbA00
3A2ZA 3S0QA 4LJ1A 4CGKA 4FDYA 2XIVA 4OLKA 3A30A 4F4MA 2EVRA 4FGIA 2K3AA 2LRJA 4F0WA 2VPMA 3NPFA 3VPIA 4EQAA 3O98A 3VPJA 2VPSA 4FQAA 4Q4TA 3A2YA 4FGDA 4FQBA 4CT3A 4Q4NA 4Q4GX 4HPEA 2IOAA 2HBWA 3H41A 2IO8A 4R0KA 2IO9A 2IOBA 4EOBA 4FGEA 4CSHA 4HZBA 3PBCA 2FG0A 4F0VA 3KW0A 3NE0A 3PBIA 4JXBA 2IO7A 2VOBA 3PVQA 2IF6A 2K1GA 3M1UA 4EQ8A 3I86A 4HZ9A 3GT2A
chains in the Genus database with same CATH superfamily
3A2ZA 3S0QA 4LJ1A 4CGKA 4HFLA 2WP7A 4FDYA 2XIVA 4OLKA 3A30A 4F4MA 2EVRA 4FGIA 2K3AA 2LRJA 4J30A 2VPMA 3NPFA 4JURA 3VPIA 4EQAA 4F0WA 3O98A 3VPJA 2VPSA 4FQAA 4Q4TA 3A2YA 4FGDA 4FQBA 4CT3A 4Q4NA 4Q4GX 4HPEA 2IOAA 2HBWA 3H41A 2IO8A 4R0KA 2IO9A 2IOBA 4EOBA 4FGEA 4HFKA 4CSHA 4HFFA 3PBCA 2FG0A 4HZBA 4F0VA 4J32A 3KW0A 3NE0A 3PBIA 4JXBA 2IO7A 2VOBA 3EBQA 3PVQA 2IF6A 2K1GA 3M1UA 4EQ8A 3I86A 4HZ9A 3GT2A
chains in the Genus database with same CATH topology
3A2ZA 3S0QA 4LJ1A 4CGKA 4FDYA 2XIVA 4OLKA 3A30A 4F4MA 2EVRA 4FGIA 2K3AA 2LRJA 4F0WA 2VPMA 3NPFA 3VPIA 4EQAA 3O98A 3VPJA 2VPSA 4FQAA 4Q4TA 3A2YA 4FGDA 4FQBA 4CT3A 4Q4NA 4Q4GX 4HPEA 2IOAA 2HBWA 3H41A 2IO8A 4R0KA 2IO9A 2IOBA 4EOBA 4FGEA 4CSHA 4HZBA 3PBCA 2FG0A 4F0VA 3KW0A 3NE0A 3PBIA 4JXBA 2IO7A 2VOBA 3PVQA 2IF6A 2K1GA 3M1UA 4EQ8A 3I86A 4HZ9A 3GT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2Z A;  3S0Q A;  4LJ1 A;  4CGK A;  4FDY A;  2XIV A;  4OLK A;  3A30 A;  4F4M A;  2EVR A;  4FGI A;  2K3A A;  2LRJ A;  4F0W A;  2VPM A;  3NPF A;  3VPI A;  4EQA A;  3O98 A;  3VPJ A;  2VPS A;  4FQA A;  4Q4T A;  3A2Y A;  4FGD A;  4FQB A;  4CT3 A;  4Q4N A;  4Q4G X;  4HPE A;  2IOA A;  2HBW A;  3H41 A;  2IO8 A;  4R0K A;  2IO9 A;  2IOB A;  4EOB A;  4FGE A;  4CSH A;  4HZB A;  3PBC A;  2FG0 A;  4F0V A;  3KW0 A;  3NE0 A;  3PBI A;  4JXB A;  2IO7 A;  2VOB A;  3PVQ A;  2IF6 A;  2K1G A;  3M1U A;  4EQ8 A;  3I86 A;  4HZ9 A;  3GT2 A; 
#chains in the Genus database with same CATH topology
 3A2Z A;  3S0Q A;  4LJ1 A;  4CGK A;  4HFL A;  2WP7 A;  4FDY A;  2XIV A;  4OLK A;  3A30 A;  4F4M A;  2EVR A;  4FGI A;  2K3A A;  2LRJ A;  4J30 A;  2VPM A;  3NPF A;  4JUR A;  3VPI A;  4EQA A;  4F0W A;  3O98 A;  3VPJ A;  2VPS A;  4FQA A;  4Q4T A;  3A2Y A;  4FGD A;  4FQB A;  4CT3 A;  4Q4N A;  4Q4G X;  4HPE A;  2IOA A;  2HBW A;  3H41 A;  2IO8 A;  4R0K A;  2IO9 A;  2IOB A;  4EOB A;  4FGE A;  4HFK A;  4CSH A;  4HFF A;  3PBC A;  2FG0 A;  4HZB A;  4F0V A;  4J32 A;  3KW0 A;  3NE0 A;  3PBI A;  4JXB A;  2IO7 A;  2VOB A;  3EBQ A;  3PVQ A;  2IF6 A;  2K1G A;  3M1U A;  4EQ8 A;  3I86 A;  4HZ9 A;  3GT2 A; 
#chains in the Genus database with same CATH homology
 3A2Z A;  3S0Q A;  4LJ1 A;  4CGK A;  4FDY A;  2XIV A;  4OLK A;  3A30 A;  4F4M A;  2EVR A;  4FGI A;  2K3A A;  2LRJ A;  4F0W A;  2VPM A;  3NPF A;  3VPI A;  4EQA A;  3O98 A;  3VPJ A;  2VPS A;  4FQA A;  4Q4T A;  3A2Y A;  4FGD A;  4FQB A;  4CT3 A;  4Q4N A;  4Q4G X;  4HPE A;  2IOA A;  2HBW A;  3H41 A;  2IO8 A;  4R0K A;  2IO9 A;  2IOB A;  4EOB A;  4FGE A;  4CSH A;  4HZB A;  3PBC A;  2FG0 A;  4F0V A;  3KW0 A;  3NE0 A;  3PBI A;  4JXB A;  2IO7 A;  2VOB A;  3PVQ A;  2IF6 A;  2K1G A;  3M1U A;  4EQ8 A;  3I86 A;  4HZ9 A;  3GT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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