3VPIA

Crystal structure of type vi effector tse1 from pseudomonas aeruginosa
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords type VI secretion exported 1
total genus 41
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-03-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3vpiA00
2IO8A 2IOBA 2XIVA 4LJ1A 3VPJA 4Q4NA 4Q4TA 4CSHA 3GT2A 3KW0A 3H41A 2VPMA 3M1UA 4HZ9A 4HPEA 2K1GA 2IF6A 2VOBA 3PBIA 4OLKA 3PVQA 3PBCA 2K3AA 3VPIA 2LRJA 4FQBA 4CT3A 3A2ZA 4FGDA 4EOBA 4FGIA 2VPSA 4HZBA 2IOAA 4FDYA 4R0KA 2EVRA 4EQ8A 2FG0A 3O98A 3S0QA 3A30A 4Q4GX 3A2YA 4FGEA 2HBWA 3I86A 4CGKA 3NE0A 2IO9A 4JXBA 4F0VA 4F4MA 4FQAA 2IO7A 3NPFA 4EQAA 4F0WA
chains in the Genus database with same CATH superfamily
2IO8A 4J30A 2IOBA 2XIVA 4JURA 4LJ1A 3VPJA 4Q4NA 4Q4TA 4CSHA 3GT2A 3KW0A 3H41A 2VPMA 3M1UA 4HZ9A 4HPEA 2WP7A 2K1GA 2IF6A 2VOBA 3PBIA 4OLKA 3PVQA 3PBCA 2K3AA 4HFLA 3VPIA 2LRJA 4FQBA 4CT3A 3A2ZA 4FGDA 4HFKA 4EOBA 4FGIA 2VPSA 3EBQA 4HZBA 2IOAA 4FDYA 4J32A 4R0KA 2EVRA 4EQ8A 2FG0A 3O98A 3S0QA 3A30A 4Q4GX 3A2YA 4FGEA 2HBWA 3I86A 4HFFA 3NE0A 2IO9A 4CGKA 4JXBA 4F0VA 4F4MA 4FQAA 2IO7A 3NPFA 4EQAA 4F0WA
chains in the Genus database with same CATH topology
2IO8A 2IOBA 2XIVA 4LJ1A 3VPJA 4Q4NA 4Q4TA 4CSHA 3GT2A 3KW0A 3H41A 2VPMA 3M1UA 4HZ9A 4HPEA 2K1GA 2IF6A 2VOBA 3PBIA 4OLKA 3PVQA 3PBCA 2K3AA 3VPIA 2LRJA 4FQBA 4CT3A 3A2ZA 4FGDA 4EOBA 4FGIA 2VPSA 4HZBA 2IOAA 4FDYA 4R0KA 2EVRA 4EQ8A 2FG0A 3O98A 3S0QA 3A30A 4Q4GX 3A2YA 4FGEA 2HBWA 3I86A 4CGKA 3NE0A 2IO9A 4JXBA 4F0VA 4F4MA 4FQAA 2IO7A 3NPFA 4EQAA 4F0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IO8 A;  2IOB A;  2XIV A;  4LJ1 A;  3VPJ A;  4Q4N A;  4Q4T A;  4CSH A;  3GT2 A;  3KW0 A;  3H41 A;  2VPM A;  3M1U A;  4HZ9 A;  4HPE A;  2K1G A;  2IF6 A;  2VOB A;  3PBI A;  4OLK A;  3PVQ A;  3PBC A;  2K3A A;  3VPI A;  2LRJ A;  4FQB A;  4CT3 A;  3A2Z A;  4FGD A;  4EOB A;  4FGI A;  2VPS A;  4HZB A;  2IOA A;  4FDY A;  4R0K A;  2EVR A;  4EQ8 A;  2FG0 A;  3O98 A;  3S0Q A;  3A30 A;  4Q4G X;  3A2Y A;  4FGE A;  2HBW A;  3I86 A;  4CGK A;  3NE0 A;  2IO9 A;  4JXB A;  4F0V A;  4F4M A;  4FQA A;  2IO7 A;  3NPF A;  4EQA A;  4F0W A; 
#chains in the Genus database with same CATH topology
 2IO8 A;  4J30 A;  2IOB A;  2XIV A;  4JUR A;  4LJ1 A;  3VPJ A;  4Q4N A;  4Q4T A;  4CSH A;  3GT2 A;  3KW0 A;  3H41 A;  2VPM A;  3M1U A;  4HZ9 A;  4HPE A;  2WP7 A;  2K1G A;  2IF6 A;  2VOB A;  3PBI A;  4OLK A;  3PVQ A;  3PBC A;  2K3A A;  4HFL A;  3VPI A;  2LRJ A;  4FQB A;  4CT3 A;  3A2Z A;  4FGD A;  4HFK A;  4EOB A;  4FGI A;  2VPS A;  3EBQ A;  4HZB A;  2IOA A;  4FDY A;  4J32 A;  4R0K A;  2EVR A;  4EQ8 A;  2FG0 A;  3O98 A;  3S0Q A;  3A30 A;  4Q4G X;  3A2Y A;  4FGE A;  2HBW A;  3I86 A;  4HFF A;  3NE0 A;  2IO9 A;  4CGK A;  4JXB A;  4F0V A;  4F4M A;  4FQA A;  2IO7 A;  3NPF A;  4EQA A;  4F0W A; 
#chains in the Genus database with same CATH homology
 2IO8 A;  2IOB A;  2XIV A;  4LJ1 A;  3VPJ A;  4Q4N A;  4Q4T A;  4CSH A;  3GT2 A;  3KW0 A;  3H41 A;  2VPM A;  3M1U A;  4HZ9 A;  4HPE A;  2K1G A;  2IF6 A;  2VOB A;  3PBI A;  4OLK A;  3PVQ A;  3PBC A;  2K3A A;  3VPI A;  2LRJ A;  4FQB A;  4CT3 A;  3A2Z A;  4FGD A;  4EOB A;  4FGI A;  2VPS A;  4HZB A;  2IOA A;  4FDY A;  4R0K A;  2EVR A;  4EQ8 A;  2FG0 A;  3O98 A;  3S0Q A;  3A30 A;  4Q4G X;  3A2Y A;  4FGE A;  2HBW A;  3I86 A;  4CGK A;  3NE0 A;  2IO9 A;  4JXB A;  4F0V A;  4F4M A;  4FQA A;  2IO7 A;  3NPF A;  4EQA A;  4F0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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