2IO9A

E. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ ,gsh and adp
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
609
structure length
601
Chain Sequence
APFGTLLGYAPGGVAIYSSDYSSDAVFRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dual binding sites for translocation catalysis by Escherichia coli glutathionylspermidine synthetase
pubmed doi rcsb
molecule tags Ligase, hydrolase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 169
structure length 601
sequence length 609
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2io9A01
4FDYA 2IOBA 3A2YA 2FG0A 2VPMA 4EQ8A 2HBWA 3PBCA 4FGEA 4FQAA 4CT3A 4FGIA 4FQBA 3PBIA 2EVRA 2VOBA 2IO7A 2IOAA 3NE0A 3KW0A 4JXBA 2IO9A 4OLKA 3VPIA 3A2ZA 3NPFA 4LJ1A 2IF6A 4Q4TA 2XIVA 2K1GA 4EQAA 3VPJA 2IO8A 4Q4NA 4EOBA 4HZBA 3A30A 4F0WA 3H41A 3M1UA 4R0KA 2K3AA 4CGKA 2VPSA 4HPEA 4Q4GX 3S0QA 3O98A 4CSHA 2LRJA 4HZ9A 3I86A 4FGDA 4F4MA 3PVQA 3GT2A 4F0VA
chains in the Genus database with same CATH superfamily
4FDYA 2IOBA 3A2YA 2FG0A 2VPMA 4EQ8A 2HBWA 4J32A 3PBCA 4FGEA 4FQAA 4CT3A 4FGIA 4FQBA 3PBIA 2EVRA 2VOBA 2IO7A 4J30A 2IOAA 3NE0A 3KW0A 4JXBA 2IO9A 2WP7A 4OLKA 3VPIA 3A2ZA 3NPFA 4LJ1A 4HFLA 2IF6A 4Q4TA 2XIVA 2K1GA 4EQAA 3VPJA 2IO8A 4Q4NA 4EOBA 4HZBA 3A30A 4F0WA 3H41A 3M1UA 4R0KA 2K3AA 4HFFA 4CGKA 2VPSA 4HPEA 4Q4GX 3S0QA 3O98A 4JURA 4CSHA 2LRJA 3EBQA 4HZ9A 3I86A 4FGDA 4HFKA 4F4MA 3PVQA 3GT2A 4F0VA
chains in the Genus database with same CATH topology
4FDYA 2IOBA 3A2YA 2FG0A 2VPMA 4EQ8A 2HBWA 3PBCA 4FGEA 4FQAA 4CT3A 4FGIA 4FQBA 3PBIA 2EVRA 2VOBA 2IO7A 2IOAA 3NE0A 3KW0A 4JXBA 2IO9A 4OLKA 3VPIA 3A2ZA 3NPFA 4LJ1A 2IF6A 4Q4TA 2XIVA 2K1GA 4EQAA 3VPJA 2IO8A 4Q4NA 4EOBA 4HZBA 3A30A 4F0WA 3H41A 3M1UA 4R0KA 2K3AA 4CGKA 2VPSA 4HPEA 4Q4GX 3S0QA 3O98A 4CSHA 2LRJA 4HZ9A 3I86A 4FGDA 4F4MA 3PVQA 3GT2A 4F0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FDY A;  2IOB A;  3A2Y A;  2FG0 A;  2VPM A;  4EQ8 A;  2HBW A;  3PBC A;  4FGE A;  4FQA A;  4CT3 A;  4FGI A;  4FQB A;  3PBI A;  2EVR A;  2VOB A;  2IO7 A;  2IOA A;  3NE0 A;  3KW0 A;  4JXB A;  2IO9 A;  4OLK A;  3VPI A;  3A2Z A;  3NPF A;  4LJ1 A;  2IF6 A;  4Q4T A;  2XIV A;  2K1G A;  4EQA A;  3VPJ A;  2IO8 A;  4Q4N A;  4EOB A;  4HZB A;  3A30 A;  4F0W A;  3H41 A;  3M1U A;  4R0K A;  2K3A A;  4CGK A;  2VPS A;  4HPE A;  4Q4G X;  3S0Q A;  3O98 A;  4CSH A;  2LRJ A;  4HZ9 A;  3I86 A;  4FGD A;  4F4M A;  3PVQ A;  3GT2 A;  4F0V A; 
#chains in the Genus database with same CATH topology
 4FDY A;  2IOB A;  3A2Y A;  2FG0 A;  2VPM A;  4EQ8 A;  2HBW A;  4J32 A;  3PBC A;  4FGE A;  4FQA A;  4CT3 A;  4FGI A;  4FQB A;  3PBI A;  2EVR A;  2VOB A;  2IO7 A;  4J30 A;  2IOA A;  3NE0 A;  3KW0 A;  4JXB A;  2IO9 A;  2WP7 A;  4OLK A;  3VPI A;  3A2Z A;  3NPF A;  4LJ1 A;  4HFL A;  2IF6 A;  4Q4T A;  2XIV A;  2K1G A;  4EQA A;  3VPJ A;  2IO8 A;  4Q4N A;  4EOB A;  4HZB A;  3A30 A;  4F0W A;  3H41 A;  3M1U A;  4R0K A;  2K3A A;  4HFF A;  4CGK A;  2VPS A;  4HPE A;  4Q4G X;  3S0Q A;  3O98 A;  4JUR A;  4CSH A;  2LRJ A;  3EBQ A;  4HZ9 A;  3I86 A;  4FGD A;  4HFK A;  4F4M A;  3PVQ A;  3GT2 A;  4F0V A; 
#chains in the Genus database with same CATH homology
 4FDY A;  2IOB A;  3A2Y A;  2FG0 A;  2VPM A;  4EQ8 A;  2HBW A;  3PBC A;  4FGE A;  4FQA A;  4CT3 A;  4FGI A;  4FQB A;  3PBI A;  2EVR A;  2VOB A;  2IO7 A;  2IOA A;  3NE0 A;  3KW0 A;  4JXB A;  2IO9 A;  4OLK A;  3VPI A;  3A2Z A;  3NPF A;  4LJ1 A;  2IF6 A;  4Q4T A;  2XIV A;  2K1G A;  4EQA A;  3VPJ A;  2IO8 A;  4Q4N A;  4EOB A;  4HZB A;  3A30 A;  4F0W A;  3H41 A;  3M1U A;  4R0K A;  2K3A A;  4CGK A;  2VPS A;  4HPE A;  4Q4G X;  3S0Q A;  3O98 A;  4CSH A;  2LRJ A;  4HZ9 A;  3I86 A;  4FGD A;  4F4M A;  3PVQ A;  3GT2 A;  4F0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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