2K1GA

Solution nmr structure of lipoprotein spr from escherichia coli k12. northeast structural genomics target er541-37-162
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
129
structure length
129
Chain Sequence
MNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTFREQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRYNEARRVLSRSLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.
pubmed doi rcsb
molecule tags Lipoprotein
source organism Escherichia coli
molecule keywords Lipoprotein spr
total genus 30
structure length 129
sequence length 129
ec nomenclature ec 3.4.17.13: Muramoyltetrapeptide carboxypeptidase.
pdb deposition date 2008-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2k1gA00
3NPFA 2IO8A 2IOAA 3A2ZA 2IOBA 2K3AA 2K1GA 3M1UA 4JXBA 3VPJA 3S0QA 2VPMA 4EQAA 3GT2A 4FQBA 4Q4NA 3H41A 4CGKA 3A2YA 4HPEA 3A30A 4EOBA 3PBCA 4Q4GX 3PVQA 4Q4TA 4F0WA 4F0VA 4LJ1A 4FQAA 4FGDA 4FGIA 4CSHA 2IF6A 2VPSA 3KW0A 2VOBA 2HBWA 3PBIA 4F4MA 2IO9A 3I86A 2EVRA 2IO7A 4EQ8A 4FDYA 3VPIA 4FGEA 3NE0A 4HZ9A 2XIVA 2FG0A 4HZBA 4R0KA 2LRJA 4CT3A 4OLKA 3O98A
chains in the Genus database with same CATH superfamily
3NPFA 2IO8A 2IOAA 3A2ZA 2IOBA 2K3AA 2K1GA 3M1UA 4JXBA 3VPJA 3S0QA 2VPMA 4EQAA 3GT2A 4FQBA 4Q4NA 3H41A 4CGKA 3A2YA 4HPEA 3A30A 3EBQA 4EOBA 3PBCA 4Q4GX 3PVQA 4Q4TA 4F0WA 4F0VA 4LJ1A 4FQAA 4FGDA 4FGIA 4CSHA 2IF6A 2VPSA 3KW0A 4HFFA 4JURA 2WP7A 2VOBA 2HBWA 3PBIA 4F4MA 4J32A 2IO9A 3I86A 2EVRA 2IO7A 4HFLA 4J30A 4FDYA 4EQ8A 3VPIA 4FGEA 3NE0A 4HZ9A 2XIVA 2FG0A 4HZBA 4HFKA 4R0KA 2LRJA 4CT3A 4OLKA 3O98A
chains in the Genus database with same CATH topology
3NPFA 2IO8A 2IOAA 3A2ZA 2IOBA 2K3AA 2K1GA 3M1UA 4JXBA 3VPJA 3S0QA 2VPMA 4EQAA 3GT2A 4FQBA 4Q4NA 3H41A 4CGKA 3A2YA 4HPEA 3A30A 4EOBA 3PBCA 4Q4GX 3PVQA 4Q4TA 4F0WA 4F0VA 4LJ1A 4FQAA 4FGDA 4FGIA 4CSHA 2IF6A 2VPSA 3KW0A 2VOBA 2HBWA 3PBIA 4F4MA 2IO9A 3I86A 2EVRA 2IO7A 4EQ8A 4FDYA 3VPIA 4FGEA 3NE0A 4HZ9A 2XIVA 2FG0A 4HZBA 4R0KA 2LRJA 4CT3A 4OLKA 3O98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NPF A;  2IO8 A;  2IOA A;  3A2Z A;  2IOB A;  2K3A A;  2K1G A;  3M1U A;  4JXB A;  3VPJ A;  3S0Q A;  2VPM A;  4EQA A;  3GT2 A;  4FQB A;  4Q4N A;  3H41 A;  4CGK A;  3A2Y A;  4HPE A;  3A30 A;  4EOB A;  3PBC A;  4Q4G X;  3PVQ A;  4Q4T A;  4F0W A;  4F0V A;  4LJ1 A;  4FQA A;  4FGD A;  4FGI A;  4CSH A;  2IF6 A;  2VPS A;  3KW0 A;  2VOB A;  2HBW A;  3PBI A;  4F4M A;  2IO9 A;  3I86 A;  2EVR A;  2IO7 A;  4EQ8 A;  4FDY A;  3VPI A;  4FGE A;  3NE0 A;  4HZ9 A;  2XIV A;  2FG0 A;  4HZB A;  4R0K A;  2LRJ A;  4CT3 A;  4OLK A;  3O98 A; 
#chains in the Genus database with same CATH topology
 3NPF A;  2IO8 A;  2IOA A;  3A2Z A;  2IOB A;  2K3A A;  2K1G A;  3M1U A;  4JXB A;  3VPJ A;  3S0Q A;  2VPM A;  4EQA A;  3GT2 A;  4FQB A;  4Q4N A;  3H41 A;  4CGK A;  3A2Y A;  4HPE A;  3A30 A;  3EBQ A;  4EOB A;  3PBC A;  4Q4G X;  3PVQ A;  4Q4T A;  4F0W A;  4F0V A;  4LJ1 A;  4FQA A;  4FGD A;  4FGI A;  4CSH A;  2IF6 A;  2VPS A;  3KW0 A;  4HFF A;  4JUR A;  2WP7 A;  2VOB A;  2HBW A;  3PBI A;  4F4M A;  4J32 A;  2IO9 A;  3I86 A;  2EVR A;  2IO7 A;  4HFL A;  4J30 A;  4FDY A;  4EQ8 A;  3VPI A;  4FGE A;  3NE0 A;  4HZ9 A;  2XIV A;  2FG0 A;  4HZB A;  4HFK A;  4R0K A;  2LRJ A;  4CT3 A;  4OLK A;  3O98 A; 
#chains in the Genus database with same CATH homology
 3NPF A;  2IO8 A;  2IOA A;  3A2Z A;  2IOB A;  2K3A A;  2K1G A;  3M1U A;  4JXB A;  3VPJ A;  3S0Q A;  2VPM A;  4EQA A;  3GT2 A;  4FQB A;  4Q4N A;  3H41 A;  4CGK A;  3A2Y A;  4HPE A;  3A30 A;  4EOB A;  3PBC A;  4Q4G X;  3PVQ A;  4Q4T A;  4F0W A;  4F0V A;  4LJ1 A;  4FQA A;  4FGD A;  4FGI A;  4CSH A;  2IF6 A;  2VPS A;  3KW0 A;  2VOB A;  2HBW A;  3PBI A;  4F4M A;  2IO9 A;  3I86 A;  2EVR A;  2IO7 A;  4EQ8 A;  4FDY A;  3VPI A;  4FGE A;  3NE0 A;  4HZ9 A;  2XIV A;  2FG0 A;  4HZB A;  4R0K A;  2LRJ A;  4CT3 A;  4OLK A;  3O98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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