2K3VA

Solution structure of a tetrahaem cytochrome from shewanella frigidimarina
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
86
structure length
86
Chain Sequence
ADETLAEFHVEMGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHDDGRTAK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The solution structure of a tetraheme cytochrome from Shewanella frigidimarina reveals a novel family structural motif
pubmed doi rcsb
molecule tags Electron transport
source organism Shewanella frigidimarina
molecule keywords Tetraheme cytochrome c-type
total genus 9
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 2k3vA00
3SXQA 1SP3A 2OT4A 2VR0A 1JNIA 3D1IA 3TORA 1OAHA 1QJDA 3SCEA 3TTBA 2E81A 2RDZA 3LG1A 1BVBA 1M1RA 1D4EA 3GM6A 4Q5BA 3UU9A 4Q1OA 1FS9A 1JRXA 3BNHA 3BNFA 1FT5A 3UBRA 1M1PA 1P2EA 4L3XA 2E80A 1JRZA 1D4DA 4L3ZA 3S7WA 1QDBA 4Q5CA 1Y0PA 1E39A 1D4CA 1GU6A 1KSSA 2J7AA 4L3YA 3RKHA 1P2HA 4Q0TA 3OWMA 3MMOA 3L1TA 4Q17A 3FO3A 1JRYA 1KSUA 1M1QA 3F29A 4Q4UA 3BNJA 1FS8A 3LGQA 2ZO5A 1LJ1A 3BNGA 1QO8A 2B7SA 1Q9IA 1FT6A 4L38A 4WJYA 1FS7A 2K3VA 2RF7A 2B7RA 1M64A
chains in the Genus database with same CATH superfamily
3SXQA 1SP3A 2OT4A 2VR0A 1JNIA 3D1IA 3TORA 1OAHA 2CZSA 1QJDA 3SCEA 3TTBA 2E81A 2RDZA 3LG1A 1BVBA 1M1RA 1D4EA 3GM6A 4Q5BA 3UU9A 4Q1OA 1FS9A 1JRXA 3BNHA 3BNFA 1FT5A 3UBRA 1M1PA 1P2EA 4L3XA 2E80A 1JRZA 1D4DA 4L3ZA 3S7WA 1QDBA 4Q5CA 1Y0PA 1E39A 1D4CA 1GU6A 1KSSA 2J7AA 4L3YA 3RKHA 1P2HA 4Q0TA 3OWMA 3MMOA 3L1TA 4Q17A 3FO3A 1JRYA 1KSUA 1M1QA 3F29A 4Q4UA 3BNJA 1FS8A 3LGQA 2ZO5A 1LJ1A 3BNGA 1QO8A 2B7SA 1Q9IA 1FT6A 4L38A 4WJYA 1FS7A 2K3VA 2RF7A 2B7RA 1M64A
chains in the Genus database with same CATH topology
3SXQA 1SP3A 2OT4A 2VR0A 1JNIA 3D1IA 3TORA 1OAHA 1QJDA 3SCEA 3TTBA 2E81A 2RDZA 3LG1A 1BVBA 1M1RA 1D4EA 3GM6A 4Q5BA 3UU9A 4Q1OA 1FS9A 1JRXA 3BNHA 3BNFA 1FT5A 3UBRA 1M1PA 1P2EA 4L3XA 2E80A 1JRZA 1D4DA 4L3ZA 3S7WA 1QDBA 4Q5CA 1Y0PA 1E39A 1D4CA 1GU6A 1KSSA 2J7AA 4L3YA 3RKHA 1P2HA 4Q0TA 3OWMA 3MMOA 3L1TA 4Q17A 3FO3A 1JRYA 1KSUA 1M1QA 3F29A 4Q4UA 3BNJA 1FS8A 3LGQA 2ZO5A 1LJ1A 3BNGA 1QO8A 2B7SA 1Q9IA 1FT6A 4L38A 4WJYA 1FS7A 2K3VA 2RF7A 2B7RA 1M64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SXQ A;  1SP3 A;  2OT4 A;  2VR0 A;  1JNI A;  3D1I A;  3TOR A;  1OAH A;  1QJD A;  3SCE A;  3TTB A;  2E81 A;  2RDZ A;  3LG1 A;  1BVB A;  1M1R A;  1D4E A;  3GM6 A;  4Q5B A;  3UU9 A;  4Q1O A;  1FS9 A;  1JRX A;  3BNH A;  3BNF A;  1FT5 A;  3UBR A;  1M1P A;  1P2E A;  4L3X A;  2E80 A;  1JRZ A;  1D4D A;  4L3Z A;  3S7W A;  1QDB A;  4Q5C A;  1Y0P A;  1E39 A;  1D4C A;  1GU6 A;  1KSS A;  2J7A A;  4L3Y A;  3RKH A;  1P2H A;  4Q0T A;  3OWM A;  3MMO A;  3L1T A;  4Q17 A;  3FO3 A;  1JRY A;  1KSU A;  1M1Q A;  3F29 A;  4Q4U A;  3BNJ A;  1FS8 A;  3LGQ A;  2ZO5 A;  1LJ1 A;  3BNG A;  1QO8 A;  2B7S A;  1Q9I A;  1FT6 A;  4L38 A;  4WJY A;  1FS7 A;  2K3V A;  2RF7 A;  2B7R A;  1M64 A; 
#chains in the Genus database with same CATH topology
 3SXQ A;  1SP3 A;  2OT4 A;  2VR0 A;  1JNI A;  3D1I A;  3TOR A;  1OAH A;  2CZS A;  1QJD A;  3SCE A;  3TTB A;  2E81 A;  2RDZ A;  3LG1 A;  1BVB A;  1M1R A;  1D4E A;  3GM6 A;  4Q5B A;  3UU9 A;  4Q1O A;  1FS9 A;  1JRX A;  3BNH A;  3BNF A;  1FT5 A;  3UBR A;  1M1P A;  1P2E A;  4L3X A;  2E80 A;  1JRZ A;  1D4D A;  4L3Z A;  3S7W A;  1QDB A;  4Q5C A;  1Y0P A;  1E39 A;  1D4C A;  1GU6 A;  1KSS A;  2J7A A;  4L3Y A;  3RKH A;  1P2H A;  4Q0T A;  3OWM A;  3MMO A;  3L1T A;  4Q17 A;  3FO3 A;  1JRY A;  1KSU A;  1M1Q A;  3F29 A;  4Q4U A;  3BNJ A;  1FS8 A;  3LGQ A;  2ZO5 A;  1LJ1 A;  3BNG A;  1QO8 A;  2B7S A;  1Q9I A;  1FT6 A;  4L38 A;  4WJY A;  1FS7 A;  2K3V A;  2RF7 A;  2B7R A;  1M64 A; 
#chains in the Genus database with same CATH homology
 3SXQ A;  1SP3 A;  2OT4 A;  2VR0 A;  1JNI A;  3D1I A;  3TOR A;  1OAH A;  1QJD A;  3SCE A;  3TTB A;  2E81 A;  2RDZ A;  3LG1 A;  1BVB A;  1M1R A;  1D4E A;  3GM6 A;  4Q5B A;  3UU9 A;  4Q1O A;  1FS9 A;  1JRX A;  3BNH A;  3BNF A;  1FT5 A;  3UBR A;  1M1P A;  1P2E A;  4L3X A;  2E80 A;  1JRZ A;  1D4D A;  4L3Z A;  3S7W A;  1QDB A;  4Q5C A;  1Y0P A;  1E39 A;  1D4C A;  1GU6 A;  1KSS A;  2J7A A;  4L3Y A;  3RKH A;  1P2H A;  4Q0T A;  3OWM A;  3MMO A;  3L1T A;  4Q17 A;  3FO3 A;  1JRY A;  1KSU A;  1M1Q A;  3F29 A;  4Q4U A;  3BNJ A;  1FS8 A;  3LGQ A;  2ZO5 A;  1LJ1 A;  3BNG A;  1QO8 A;  2B7S A;  1Q9I A;  1FT6 A;  4L38 A;  4WJY A;  1FS7 A;  2K3V A;  2RF7 A;  2B7R A;  1M64 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...