2K3VA

Solution structure of a tetrahaem cytochrome from shewanella frigidimarina
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
86
structure length
86
Chain Sequence
ADETLAEFHVEMGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHDDGRTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The solution structure of a tetraheme cytochrome from Shewanella frigidimarina reveals a novel family structural motif
pubmed doi rcsb
molecule tags Electron transport
source organism Shewanella frigidimarina
molecule keywords Tetraheme cytochrome c-type
total genus 9
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 2k3vA00
2VR0A 3D1IA 1M1RA 3L1TA 1E39A 1JNIA 2E81A 3GM6A 3TORA 1FT5A 1Q9IA 1KSUA 1FT6A 1KSSA 2ZO5A 4Q1OA 3RKHA 1SP3A 2OT4A 3TTBA 4L3XA 1QO8A 1OAHA 2J7AA 1QDBA 3MMOA 3UU9A 2K3VA 1FS7A 3SCEA 1LJ1A 4Q17A 1GU6A 1M64A 2B7SA 1P2EA 3BNFA 4L38A 3S7WA 3UBRA 4WJYA 1Y0PA 1P2HA 1BVBA 3BNHA 3LG1A 3BNGA 4Q0TA 1JRYA 3FO3A 1FS8A 3F29A 2B7RA 4L3ZA 4Q5BA 1FS9A 2RF7A 1QJDA 2E80A 3LGQA 1D4CA 3OWMA 4L3YA 3SXQA 3BNJA 4Q4UA 1M1PA 1D4EA 1JRXA 4Q5CA 1M1QA 1JRZA 2RDZA 1D4DA
chains in the Genus database with same CATH superfamily
2CZSA 2VR0A 1M1RA 3D1IA 3L1TA 1E39A 1JNIA 2E81A 3GM6A 3TORA 1FT5A 1Q9IA 1KSUA 1FT6A 1KSSA 2ZO5A 4Q1OA 3RKHA 1SP3A 2OT4A 3TTBA 4L3XA 1QO8A 1OAHA 2J7AA 1QDBA 3MMOA 3UU9A 2K3VA 1FS7A 3SCEA 1LJ1A 4Q17A 1GU6A 1M64A 2B7SA 1P2EA 3BNFA 4L38A 3S7WA 3UBRA 4WJYA 1Y0PA 1P2HA 1BVBA 3BNHA 3LG1A 3BNGA 4Q0TA 1JRYA 3FO3A 1FS8A 3F29A 2B7RA 4L3ZA 4Q5BA 1FS9A 2RF7A 1QJDA 2E80A 3LGQA 1D4CA 3OWMA 4L3YA 3SXQA 3BNJA 4Q4UA 1M1PA 1D4EA 1JRXA 4Q5CA 1M1QA 1JRZA 2RDZA 1D4DA
chains in the Genus database with same CATH topology
2VR0A 3D1IA 1M1RA 3L1TA 1E39A 1JNIA 2E81A 3GM6A 3TORA 1FT5A 1Q9IA 1KSUA 1FT6A 1KSSA 2ZO5A 4Q1OA 3RKHA 1SP3A 2OT4A 3TTBA 4L3XA 1QO8A 1OAHA 2J7AA 1QDBA 3MMOA 3UU9A 2K3VA 1FS7A 3SCEA 1LJ1A 4Q17A 1GU6A 1M64A 2B7SA 1P2EA 3BNFA 4L38A 3S7WA 3UBRA 4WJYA 1Y0PA 1P2HA 1BVBA 3BNHA 3LG1A 3BNGA 4Q0TA 1JRYA 3FO3A 1FS8A 3F29A 2B7RA 4L3ZA 4Q5BA 1FS9A 2RF7A 1QJDA 2E80A 3LGQA 1D4CA 3OWMA 4L3YA 3SXQA 3BNJA 4Q4UA 1M1PA 1D4EA 1JRXA 4Q5CA 1M1QA 1JRZA 2RDZA 1D4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VR0 A;  3D1I A;  1M1R A;  3L1T A;  1E39 A;  1JNI A;  2E81 A;  3GM6 A;  3TOR A;  1FT5 A;  1Q9I A;  1KSU A;  1FT6 A;  1KSS A;  2ZO5 A;  4Q1O A;  3RKH A;  1SP3 A;  2OT4 A;  3TTB A;  4L3X A;  1QO8 A;  1OAH A;  2J7A A;  1QDB A;  3MMO A;  3UU9 A;  2K3V A;  1FS7 A;  3SCE A;  1LJ1 A;  4Q17 A;  1GU6 A;  1M64 A;  2B7S A;  1P2E A;  3BNF A;  4L38 A;  3S7W A;  3UBR A;  4WJY A;  1Y0P A;  1P2H A;  1BVB A;  3BNH A;  3LG1 A;  3BNG A;  4Q0T A;  1JRY A;  3FO3 A;  1FS8 A;  3F29 A;  2B7R A;  4L3Z A;  4Q5B A;  1FS9 A;  2RF7 A;  1QJD A;  2E80 A;  3LGQ A;  1D4C A;  3OWM A;  4L3Y A;  3SXQ A;  3BNJ A;  4Q4U A;  1M1P A;  1D4E A;  1JRX A;  4Q5C A;  1M1Q A;  1JRZ A;  2RDZ A;  1D4D A; 
#chains in the Genus database with same CATH topology
 2CZS A;  2VR0 A;  1M1R A;  3D1I A;  3L1T A;  1E39 A;  1JNI A;  2E81 A;  3GM6 A;  3TOR A;  1FT5 A;  1Q9I A;  1KSU A;  1FT6 A;  1KSS A;  2ZO5 A;  4Q1O A;  3RKH A;  1SP3 A;  2OT4 A;  3TTB A;  4L3X A;  1QO8 A;  1OAH A;  2J7A A;  1QDB A;  3MMO A;  3UU9 A;  2K3V A;  1FS7 A;  3SCE A;  1LJ1 A;  4Q17 A;  1GU6 A;  1M64 A;  2B7S A;  1P2E A;  3BNF A;  4L38 A;  3S7W A;  3UBR A;  4WJY A;  1Y0P A;  1P2H A;  1BVB A;  3BNH A;  3LG1 A;  3BNG A;  4Q0T A;  1JRY A;  3FO3 A;  1FS8 A;  3F29 A;  2B7R A;  4L3Z A;  4Q5B A;  1FS9 A;  2RF7 A;  1QJD A;  2E80 A;  3LGQ A;  1D4C A;  3OWM A;  4L3Y A;  3SXQ A;  3BNJ A;  4Q4U A;  1M1P A;  1D4E A;  1JRX A;  4Q5C A;  1M1Q A;  1JRZ A;  2RDZ A;  1D4D A; 
#chains in the Genus database with same CATH homology
 2VR0 A;  3D1I A;  1M1R A;  3L1T A;  1E39 A;  1JNI A;  2E81 A;  3GM6 A;  3TOR A;  1FT5 A;  1Q9I A;  1KSU A;  1FT6 A;  1KSS A;  2ZO5 A;  4Q1O A;  3RKH A;  1SP3 A;  2OT4 A;  3TTB A;  4L3X A;  1QO8 A;  1OAH A;  2J7A A;  1QDB A;  3MMO A;  3UU9 A;  2K3V A;  1FS7 A;  3SCE A;  1LJ1 A;  4Q17 A;  1GU6 A;  1M64 A;  2B7S A;  1P2E A;  3BNF A;  4L38 A;  3S7W A;  3UBR A;  4WJY A;  1Y0P A;  1P2H A;  1BVB A;  3BNH A;  3LG1 A;  3BNG A;  4Q0T A;  1JRY A;  3FO3 A;  1FS8 A;  3F29 A;  2B7R A;  4L3Z A;  4Q5B A;  1FS9 A;  2RF7 A;  1QJD A;  2E80 A;  3LGQ A;  1D4C A;  3OWM A;  4L3Y A;  3SXQ A;  3BNJ A;  4Q4U A;  1M1P A;  1D4E A;  1JRX A;  4Q5C A;  1M1Q A;  1JRZ A;  2RDZ A;  1D4D A; 
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#similar chains in the Genus database (?% sequence similarity)
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