2KCU | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	166
structure length	166
Chain Sequence	MDFECQFVCELKELAPVPALLIRTQTAMSELGSLFEAGYHDILQLLAGQGKSPSGPPFARYFGMSAGTFEVEFGFPVEGGVEGSGRVVTGLTPSGKAASSLYIGPYGEIEAVYDALMKWVDDNGFDLSGEAYEIYLDNPAETAPDQLRTRVSLMLHESLEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfd4c24c468dab01de213f2/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfd4c24c468dab01de213f2/pdb.gz): 1540 ms

reading 166 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

166 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:165});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Chlorobaculum tepidum
publication title	Solution NMR structure of an uncharacterized protein from Chlorobium tepidum. Northeast Structural Genomics target CtR107 rcsb
molecule keywords	protein CtR107
total genus	31
structure length	166
sequence length	166
ec nomenclature
pdb deposition date	2008-12-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06445	GyrI-like	GyrI-like small molecule binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A	Regulatory factor, effector binding domain	2kcuA00

1D5YA 3Q5RA 1BOWA 1R8EA 3D6YA 1JYHA 2HVAA 1EXJA 3Q3DA 5KCBA 3GK6A 3B49A 3D71A 3Q5PA 3R8KA 5GQQA 3LURA 5KAUA 4A1MA 3R8JA 2GOVA 4AYZA 4B0YA 3Q2YA 5KAVA 4AYZB 3IAOA 5KATA 5KAWA 1EXIA 3Q5SA 5KAXA 2BOWA 2KCUA 3Q1MA 3D70A 3D6ZA 3E0HA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1D5Y A;  3Q5R A;  1BOW A;  1R8E A;  3D6Y A;  1JYH A;  2HVA A;  1EXJ A;  3Q3D A;  5KCB A;  3GK6 A;  3B49 A;  3D71 A;  3Q5P A;  3R8K A;  5GQQ A;  3LUR A;  5KAU A;  4A1M A;  3R8J A;  2GOV A;  4AYZ A;  4B0Y A;  3Q2Y A;  5KAV A;  4AYZ B;  3IAO A;  5KAT A;  5KAW A;  1EXI A;  3Q5S A;  5KAX A;  2BOW A;  2KCU A;  3Q1M A;  3D70 A;  3D6Z A;  3E0H A; 
#chains in the Genus database with same CATH topology
 1D5Y A;  3Q5R A;  1BOW A;  1R8E A;  3D6Y A;  1JYH A;  2HVA A;  1EXJ A;  3Q3D A;  5KCB A;  3GK6 A;  3B49 A;  3D71 A;  3Q5P A;  3R8K A;  5GQQ A;  3LUR A;  5KAU A;  4A1M A;  3R8J A;  2GOV A;  4AYZ A;  4B0Y A;  3Q2Y A;  5KAV A;  4AYZ B;  3IAO A;  5KAT A;  5KAW A;  1EXI A;  3Q5S A;  5KAX A;  2BOW A;  2KCU A;  3Q1M A;  3D70 A;  3D6Z A;  3E0H A; 
#chains in the Genus database with same CATH homology
 1D5Y A;  3Q5R A;  1BOW A;  1R8E A;  3D6Y A;  1JYH A;  2HVA A;  1EXJ A;  3Q3D A;  5KCB A;  3GK6 A;  3B49 A;  3D71 A;  3Q5P A;  3R8K A;  5GQQ A;  3LUR A;  5KAU A;  4A1M A;  3R8J A;  2GOV A;  4AYZ A;  4B0Y A;  3Q2Y A;  5KAV A;  4AYZ B;  3IAO A;  5KAT A;  5KAW A;  1EXI A;  3Q5S A;  5KAX A;  2BOW A;  2KCU A;  3Q1M A;  3D70 A;  3D6Z A;  3E0H A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2KCUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations