2LRJA

Nmr solution structure of staphyloxanthin biosynthesis protein
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
113
structure length
113
Chain Sequence
GSSISHSGNLYTAGQCTWYVYDKVGGEIGSTWGNANNWAAAAQGAGFTVNHTPSKGAILQSSEGPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of a putative S. aureus enzyme involved in the biosynthesis of staphyloxanthin
rcsb
molecule tags Biosynthetic protein
source organism Staphylococcus aureus
molecule keywords Staphyloxanthin biosynthesis protein, putative
total genus 21
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2012-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2lrjA00
3O98A 3A2YA 4HPEA 3H41A 2IOAA 3GT2A 4F0VA 2IOBA 3VPJA 2VPSA 2HBWA 4FQAA 2LRJA 2K3AA 3S0QA 4EOBA 4OLKA 4FQBA 4JXBA 4CSHA 3PBIA 2K1GA 2IO9A 3PBCA 4FGEA 2IO8A 4CT3A 4EQ8A 3NE0A 4F0WA 4R0KA 3VPIA 4FGIA 2VOBA 4FGDA 3A2ZA 3I86A 3M1UA 4Q4TA 4F4MA 4HZBA 4FDYA 3NPFA 4LJ1A 3PVQA 2XIVA 3A30A 4Q4NA 4EQAA 4CGKA 2IO7A 2EVRA 4HZ9A 3KW0A 2IF6A 4Q4GX 2VPMA 2FG0A
chains in the Genus database with same CATH superfamily
3O98A 4J32A 3A2YA 4HPEA 3H41A 4HFKA 4J30A 2IOAA 3GT2A 4F0VA 2IOBA 3VPJA 2VPSA 2HBWA 4FQAA 2LRJA 2K3AA 4JURA 3S0QA 4EOBA 4OLKA 4FQBA 4JXBA 4CSHA 3PBIA 2K1GA 2IO9A 3PBCA 4FGEA 2IO8A 4HFLA 4CT3A 4EQ8A 3NE0A 4F0WA 4R0KA 3VPIA 4FGIA 2VOBA 4FGDA 3A2ZA 3I86A 3M1UA 4Q4TA 4F4MA 4HZBA 4FDYA 3NPFA 4LJ1A 2WP7A 3PVQA 2XIVA 3A30A 4Q4NA 4EQAA 4CGKA 2IO7A 2EVRA 4HZ9A 3KW0A 4HFFA 2IF6A 4Q4GX 2VPMA 3EBQA 2FG0A
chains in the Genus database with same CATH topology
3O98A 3A2YA 4HPEA 3H41A 2IOAA 3GT2A 4F0VA 2IOBA 3VPJA 2VPSA 2HBWA 4FQAA 2LRJA 2K3AA 3S0QA 4EOBA 4OLKA 4FQBA 4JXBA 4CSHA 3PBIA 2K1GA 2IO9A 3PBCA 4FGEA 2IO8A 4CT3A 4EQ8A 3NE0A 4F0WA 4R0KA 3VPIA 4FGIA 2VOBA 4FGDA 3A2ZA 3I86A 3M1UA 4Q4TA 4F4MA 4HZBA 4FDYA 3NPFA 4LJ1A 3PVQA 2XIVA 3A30A 4Q4NA 4EQAA 4CGKA 2IO7A 2EVRA 4HZ9A 3KW0A 2IF6A 4Q4GX 2VPMA 2FG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O98 A;  3A2Y A;  4HPE A;  3H41 A;  2IOA A;  3GT2 A;  4F0V A;  2IOB A;  3VPJ A;  2VPS A;  2HBW A;  4FQA A;  2LRJ A;  2K3A A;  3S0Q A;  4EOB A;  4OLK A;  4FQB A;  4JXB A;  4CSH A;  3PBI A;  2K1G A;  2IO9 A;  3PBC A;  4FGE A;  2IO8 A;  4CT3 A;  4EQ8 A;  3NE0 A;  4F0W A;  4R0K A;  3VPI A;  4FGI A;  2VOB A;  4FGD A;  3A2Z A;  3I86 A;  3M1U A;  4Q4T A;  4F4M A;  4HZB A;  4FDY A;  3NPF A;  4LJ1 A;  3PVQ A;  2XIV A;  3A30 A;  4Q4N A;  4EQA A;  4CGK A;  2IO7 A;  2EVR A;  4HZ9 A;  3KW0 A;  2IF6 A;  4Q4G X;  2VPM A;  2FG0 A; 
#chains in the Genus database with same CATH topology
 3O98 A;  4J32 A;  3A2Y A;  4HPE A;  3H41 A;  4HFK A;  4J30 A;  2IOA A;  3GT2 A;  4F0V A;  2IOB A;  3VPJ A;  2VPS A;  2HBW A;  4FQA A;  2LRJ A;  2K3A A;  4JUR A;  3S0Q A;  4EOB A;  4OLK A;  4FQB A;  4JXB A;  4CSH A;  3PBI A;  2K1G A;  2IO9 A;  3PBC A;  4FGE A;  2IO8 A;  4HFL A;  4CT3 A;  4EQ8 A;  3NE0 A;  4F0W A;  4R0K A;  3VPI A;  4FGI A;  2VOB A;  4FGD A;  3A2Z A;  3I86 A;  3M1U A;  4Q4T A;  4F4M A;  4HZB A;  4FDY A;  3NPF A;  4LJ1 A;  2WP7 A;  3PVQ A;  2XIV A;  3A30 A;  4Q4N A;  4EQA A;  4CGK A;  2IO7 A;  2EVR A;  4HZ9 A;  3KW0 A;  4HFF A;  2IF6 A;  4Q4G X;  2VPM A;  3EBQ A;  2FG0 A; 
#chains in the Genus database with same CATH homology
 3O98 A;  3A2Y A;  4HPE A;  3H41 A;  2IOA A;  3GT2 A;  4F0V A;  2IOB A;  3VPJ A;  2VPS A;  2HBW A;  4FQA A;  2LRJ A;  2K3A A;  3S0Q A;  4EOB A;  4OLK A;  4FQB A;  4JXB A;  4CSH A;  3PBI A;  2K1G A;  2IO9 A;  3PBC A;  4FGE A;  2IO8 A;  4CT3 A;  4EQ8 A;  3NE0 A;  4F0W A;  4R0K A;  3VPI A;  4FGI A;  2VOB A;  4FGD A;  3A2Z A;  3I86 A;  3M1U A;  4Q4T A;  4F4M A;  4HZB A;  4FDY A;  3NPF A;  4LJ1 A;  3PVQ A;  2XIV A;  3A30 A;  4Q4N A;  4EQA A;  4CGK A;  2IO7 A;  2EVR A;  4HZ9 A;  3KW0 A;  2IF6 A;  4Q4G X;  2VPM A;  2FG0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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