2VPMA

Trypanothione synthetase
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
637
structure length
600
Chain Sequence
HMSSLQRASVSFNKPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERNIEDNIFFGFKYQCVEFARRWLLVRKGLLLPDVNWACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQNYRFHKWESSCAYKLKLDHRDGIWTIIDDIDADEIEIPLGWLTFPGRANRPEGAPPVALHPSLHFKEPPKPYLLRRNFLPTESKANWLDMNNPAERLFVEEFGMVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRLFAIPEEFWPRIRHSWKYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGLIQQKWAESVGLDKQDTRGSGFAVERNLKMAWANSGATGRVHFCVDEEREEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKPSPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDELRKHGYAKKPIVNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIREDKSVITGVDSPFAAVRIKTDKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Leishmania Trypanothione Synthetase-Amidase Structure Reveals a Basis for Regulation of Conflicting Synthetic and Hydrolytic Activities.
pubmed doi rcsb
molecule tags Ligase
source organism Leishmania major
molecule keywords TRYPANOTHIONE SYNTHETASE
total genus 180
structure length 600
sequence length 637
chains with identical sequence B
ec nomenclature ec 6.3.1.9: Trypanothione synthase.
pdb deposition date 2008-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2vpmA01
2LRJA 4F0WA 2IOBA 2EVRA 3A2YA 2K1GA 2IO7A 4JXBA 3S0QA 4F4MA 2VPSA 4CSHA 2IO8A 2IO9A 4CT3A 4LJ1A 3A2ZA 4Q4GX 2VPMA 4FGDA 2IF6A 3I86A 4FGEA 3KW0A 3M1UA 2XIVA 3VPIA 4HPEA 4CGKA 3O98A 4OLKA 4FDYA 2VOBA 4Q4NA 4EQAA 3VPJA 3PVQA 4F0VA 4EOBA 3PBIA 4FQBA 4HZ9A 4FGIA 4EQ8A 3A30A 3NE0A 3GT2A 3NPFA 4HZBA 4FQAA 3H41A 4Q4TA 2K3AA 2HBWA 4R0KA 2IOAA 3PBCA 2FG0A
chains in the Genus database with same CATH superfamily
2LRJA 4F0WA 4HFKA 2IOBA 2EVRA 3A2YA 2K1GA 2IO7A 4JXBA 3S0QA 4F4MA 2VPSA 4CSHA 2IO8A 2IO9A 4CT3A 4LJ1A 3A2ZA 4Q4GX 2VPMA 4FGDA 2IF6A 4HFFA 3I86A 4J30A 4JURA 4J32A 4FGEA 3KW0A 3M1UA 2XIVA 3VPIA 4HPEA 4CGKA 3O98A 4OLKA 4FDYA 2VOBA 4Q4NA 3EBQA 3VPJA 3PVQA 4EQAA 4F0VA 4EOBA 3PBIA 4FQBA 4HZ9A 4FGIA 4EQ8A 3A30A 3NE0A 3GT2A 3NPFA 4HFLA 4HZBA 4FQAA 3H41A 4Q4TA 2K3AA 2WP7A 2HBWA 4R0KA 2IOAA 3PBCA 2FG0A
chains in the Genus database with same CATH topology
2LRJA 4F0WA 2IOBA 2EVRA 3A2YA 2K1GA 2IO7A 4JXBA 3S0QA 4F4MA 2VPSA 4CSHA 2IO8A 2IO9A 4CT3A 4LJ1A 3A2ZA 4Q4GX 2VPMA 4FGDA 2IF6A 3I86A 4FGEA 3KW0A 3M1UA 2XIVA 3VPIA 4HPEA 4CGKA 3O98A 4OLKA 4FDYA 2VOBA 4Q4NA 4EQAA 3VPJA 3PVQA 4F0VA 4EOBA 3PBIA 4FQBA 4HZ9A 4FGIA 4EQ8A 3A30A 3NE0A 3GT2A 3NPFA 4HZBA 4FQAA 3H41A 4Q4TA 2K3AA 2HBWA 4R0KA 2IOAA 3PBCA 2FG0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LRJ A;  4F0W A;  2IOB A;  2EVR A;  3A2Y A;  2K1G A;  2IO7 A;  4JXB A;  3S0Q A;  4F4M A;  2VPS A;  4CSH A;  2IO8 A;  2IO9 A;  4CT3 A;  4LJ1 A;  3A2Z A;  4Q4G X;  2VPM A;  4FGD A;  2IF6 A;  3I86 A;  4FGE A;  3KW0 A;  3M1U A;  2XIV A;  3VPI A;  4HPE A;  4CGK A;  3O98 A;  4OLK A;  4FDY A;  2VOB A;  4Q4N A;  4EQA A;  3VPJ A;  3PVQ A;  4F0V A;  4EOB A;  3PBI A;  4FQB A;  4HZ9 A;  4FGI A;  4EQ8 A;  3A30 A;  3NE0 A;  3GT2 A;  3NPF A;  4HZB A;  4FQA A;  3H41 A;  4Q4T A;  2K3A A;  2HBW A;  4R0K A;  2IOA A;  3PBC A;  2FG0 A; 
#chains in the Genus database with same CATH topology
 2LRJ A;  4F0W A;  4HFK A;  2IOB A;  2EVR A;  3A2Y A;  2K1G A;  2IO7 A;  4JXB A;  3S0Q A;  4F4M A;  2VPS A;  4CSH A;  2IO8 A;  2IO9 A;  4CT3 A;  4LJ1 A;  3A2Z A;  4Q4G X;  2VPM A;  4FGD A;  2IF6 A;  4HFF A;  3I86 A;  4J30 A;  4JUR A;  4J32 A;  4FGE A;  3KW0 A;  3M1U A;  2XIV A;  3VPI A;  4HPE A;  4CGK A;  3O98 A;  4OLK A;  4FDY A;  2VOB A;  4Q4N A;  3EBQ A;  3VPJ A;  3PVQ A;  4EQA A;  4F0V A;  4EOB A;  3PBI A;  4FQB A;  4HZ9 A;  4FGI A;  4EQ8 A;  3A30 A;  3NE0 A;  3GT2 A;  3NPF A;  4HFL A;  4HZB A;  4FQA A;  3H41 A;  4Q4T A;  2K3A A;  2WP7 A;  2HBW A;  4R0K A;  2IOA A;  3PBC A;  2FG0 A; 
#chains in the Genus database with same CATH homology
 2LRJ A;  4F0W A;  2IOB A;  2EVR A;  3A2Y A;  2K1G A;  2IO7 A;  4JXB A;  3S0Q A;  4F4M A;  2VPS A;  4CSH A;  2IO8 A;  2IO9 A;  4CT3 A;  4LJ1 A;  3A2Z A;  4Q4G X;  2VPM A;  4FGD A;  2IF6 A;  3I86 A;  4FGE A;  3KW0 A;  3M1U A;  2XIV A;  3VPI A;  4HPE A;  4CGK A;  3O98 A;  4OLK A;  4FDY A;  2VOB A;  4Q4N A;  4EQA A;  3VPJ A;  3PVQ A;  4F0V A;  4EOB A;  3PBI A;  4FQB A;  4HZ9 A;  4FGI A;  4EQ8 A;  3A30 A;  3NE0 A;  3GT2 A;  3NPF A;  4HZB A;  4FQA A;  3H41 A;  4Q4T A;  2K3A A;  2HBW A;  4R0K A;  2IOA A;  3PBC A;  2FG0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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