2WP7A

Crystal structure of desumoylase(duf862)
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
158
structure length
158
Chain Sequence
PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDSIQIQPPGGNSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Desi-1, a Novel Desumoylase Belonging to a Putative Isopeptidase Superfamily.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mus musculus
molecule keywords PPPDE PEPTIDASE DOMAIN-CONTAINING PROTEIN 2
total genus 43
structure length 158
sequence length 158
ec nomenclature ec 3.4.22.-:
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05903 Peptidase_C97 PPPDE putative peptidase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.30 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 2wp7A00
2WP7A 3EBQA
chains in the Genus database with same CATH superfamily
3EBQA 4EQAA 4Q4NA 2IO8A 3PBIA 4Q4GX 2WP7A 4R0KA 4FQAA 2IOAA 2IO9A 2VOBA 2FG0A 3PBCA 4HFKA 2IO7A 4FDYA 2VPMA 4J30A 2VPSA 3A2ZA 4FGDA 4JXBA 2IOBA 4HZ9A 4CT3A 4F0VA 3A30A 4F4MA 3I86A 3VPIA 3H41A 4J32A 2IF6A 4HFFA 4CGKA 4Q4TA 3A2YA 2K1GA 2EVRA 3GT2A 3KW0A 4FGEA 2K3AA 3M1UA 4LJ1A 4CSHA 4OLKA 3PVQA 4EOBA 4EQ8A 3NPFA 4HFLA 4HZBA 4JURA 4FGIA 4HPEA 3NE0A 2HBWA 3VPJA 3S0QA 4FQBA 2LRJA 3O98A 4F0WA 2XIVA
chains in the Genus database with same CATH topology
4HFFA 4HFKA 4HFLA 3EBQA 4JURA 4J30A 2WP7A 4J32A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WP7 A;  3EBQ A; 
#chains in the Genus database with same CATH topology
 3EBQ A;  4EQA A;  4Q4N A;  2IO8 A;  3PBI A;  4Q4G X;  2WP7 A;  4R0K A;  4FQA A;  2IOA A;  2IO9 A;  2VOB A;  2FG0 A;  3PBC A;  4HFK A;  2IO7 A;  4FDY A;  2VPM A;  4J30 A;  2VPS A;  3A2Z A;  4FGD A;  4JXB A;  2IOB A;  4HZ9 A;  4CT3 A;  4F0V A;  3A30 A;  4F4M A;  3I86 A;  3VPI A;  3H41 A;  4J32 A;  2IF6 A;  4HFF A;  4CGK A;  4Q4T A;  3A2Y A;  2K1G A;  2EVR A;  3GT2 A;  3KW0 A;  4FGE A;  2K3A A;  3M1U A;  4LJ1 A;  4CSH A;  4OLK A;  3PVQ A;  4EOB A;  4EQ8 A;  3NPF A;  4HFL A;  4HZB A;  4JUR A;  4FGI A;  4HPE A;  3NE0 A;  2HBW A;  3VPJ A;  3S0Q A;  4FQB A;  2LRJ A;  3O98 A;  4F0W A;  2XIV A; 
#chains in the Genus database with same CATH homology
 4HFF A;  4HFK A;  4HFL A;  3EBQ A;  4JUR A;  4J30 A;  2WP7 A;  4J32 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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