2J2MA

Crystal structure analysis of catalase from exiguobacterium oxidotolerans
Total Genus 154
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
KKLTTNQGVPIGDNQNSRTAGRRGPTLLEDYQLIEKIAHFDRERVPERVVHARGFGAHGVFKVKNSMKKYTKAAFLQEEGTEVPVFARFSTVIHGTHSPETLRDPRGFSVKFYTEEGNWDFVGNNLPVFFIRDAMKFPDMVHSLKPDPRTNIQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVPKEGVHNLSADEATEVQGKDFNHASNDTFQAIENGDFPEWDLFVQVLDPADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETESVGFNPGVLVPGMLPSEDKLLQGRLFSYSDTQRHRIGPNYQQLPINCPFAQVNNYQRDGAMPFKQQTSSVNYEPNRYQDEPKQTPEYTEDTQPLHDDIHGRLEIEKTNNFGQAGEVYRRMTEEEQMALLNNLVNDLQQVRHENTVLLAICNFYRADASLGEKLSEALNVDIKPF
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
publication title Relationship between the Size of the Bottleneck 15 a from Iron in the Main Channel and the Reactivity of Catalase Corresponding to the Molecular Size of Substrates.
pubmed doi rcsb
molecule keywords CATALASE
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2006-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 2j2mA00
4ENTA 4E37A 5BV2P 3P9RA 1SY7A 2XQ1A 4AULA 2IQFA 1P81A 4ENSA 1GGKA 3TTVA 4QOQA 1NM0A 4AUMA 4ENUA 1P80A 1H6NA 1GGEA 1GGHA 3ZJ5A 1GGJA 4B31A 3PQ6A 3P9PA 1H7KA 1HBZA 4AJ9A 4B40A 3PQ3A 4BIMA 3EJ6A 2J2MA 4B5KA 1SI8A 3PQ2A 3TTXA 1GWHA 1GWEA 4QOPA 4CABA 1P7ZA 4B2YA 1E93A 4ENWA 4BFLA 3P9QA 2A9EA 1M7SA 3TTUA 3TTTA 3TTWA 3DY5A 4ENQA 3PQ8A 1P7YA 1QF7A 4ENRA 2CAGA 3ZJ4A 1GG9A 1U5UA 2IUFA 3PQ7A 3HB6A 1MQFA 1F4JA 1IPHA 4AUNA 3P9SA 1QWLA 1QWMA 2CAHA 1M85A 4ENVA 1GWFA 4QONA 2ISAA 4QOMA 3VU3A 4AUEA 4QOOA 4QORA 4ENPA 1A4EA 3PQ5A 1GGFA 2XF2A 4B7AA 1CF9A 3PQ4A 4QOLA 1QWSA
chains in the Genus database with same CATH superfamily
4ENTA 4E37A 5BV2P 1DGBA 3P9RA 8CATA 1SY7A 2XQ1A 4AULA 2IQFA 1P81A 4ENSA 1GGKA 3E4YA 3TTVA 4QOQA 1NM0A 4AUMA 4ENUA 1P80A 1H6NA 3RE8A 1TH2A 1GGEA 4B7FA 1TH4A 1GGHA 3ZJ5A 1GGJA 4B31A 1DGFA 3PQ6A 3P9PA 1H7KA 1HBZA 4AJ9A 4B40A 3PQ3A 3RGPA 4BIMA 3EJ6A 2J2MA 3E4WA 4B5KA 1SI8A 1TGUA 3PQ2A 3TTXA 1GWHA 1GWEA 4QOPA 4CABA 4B7GA 1P7ZA 4B2YA 1QQWA 1E93A 4ENWA 1DGGA 4BFLA 3NWLA 3P9QA 2A9EA 4BLCA 1M7SA 3TTUA 3TTTA 4B7HA 3TTWA 3DY5A 4ENQA 3PQ8A 1TH3A 5GKNA 1P7YA 1QF7A 3RGSA 4ENRA 7CATA 2CAGA 3ZJ4A 1GG9A 1U5UA 2IUFA 3PQ7A 3HB6A 1MQFA 1F4JA 1IPHA 4AUNA 3P9SA 1QWLA 1QWMA 2CAHA 1M85A 4ENVA 1GWFA 4QONA 2ISAA 4QOMA 3VU3A 4AUEA 4QOOA 4QORA 4ENPA 1A4EA 3PQ5A 3J7BA 1DGHB 1GGFA 2XF2A 4B7AA 1DGHA 1CF9A 3PQ4A 4QOLA 1QWSA
chains in the Genus database with same CATH topology
4ENTA 4E37A 5BV2P 3P9RA 1SY7A 2XQ1A 4AULA 2IQFA 1P81A 4ENSA 1GGKA 3TTVA 4QOQA 1NM0A 4AUMA 4ENUA 1P80A 1H6NA 1GGEA 1GGHA 3ZJ5A 1GGJA 4B31A 3PQ6A 3P9PA 1H7KA 1HBZA 4AJ9A 4B40A 3PQ3A 4BIMA 3EJ6A 2J2MA 4B5KA 1SI8A 3PQ2A 3TTXA 1GWHA 1GWEA 4QOPA 4CABA 1P7ZA 4B2YA 1E93A 4ENWA 4BFLA 3P9QA 2A9EA 1M7SA 3TTUA 3TTTA 3TTWA 3DY5A 4ENQA 3PQ8A 1P7YA 1QF7A 4ENRA 2CAGA 3ZJ4A 1GG9A 1U5UA 2IUFA 3PQ7A 3HB6A 1MQFA 1F4JA 1IPHA 4AUNA 3P9SA 1QWLA 1QWMA 2CAHA 1M85A 4ENVA 1GWFA 4QONA 2ISAA 4QOMA 3VU3A 4AUEA 4QOOA 4QORA 4ENPA 1A4EA 3PQ5A 1GGFA 2XF2A 4B7AA 1CF9A 3PQ4A 4QOLA 1QWSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ENT A;  4E37 A;  5BV2 P;  3P9R A;  1SY7 A;  2XQ1 A;  4AUL A;  2IQF A;  1P81 A;  4ENS A;  1GGK A;  3TTV A;  4QOQ A;  1NM0 A;  4AUM A;  4ENU A;  1P80 A;  1H6N A;  1GGE A;  1GGH A;  3ZJ5 A;  1GGJ A;  4B31 A;  3PQ6 A;  3P9P A;  1H7K A;  1HBZ A;  4AJ9 A;  4B40 A;  3PQ3 A;  4BIM A;  3EJ6 A;  2J2M A;  4B5K A;  1SI8 A;  3PQ2 A;  3TTX A;  1GWH A;  1GWE A;  4QOP A;  4CAB A;  1P7Z A;  4B2Y A;  1E93 A;  4ENW A;  4BFL A;  3P9Q A;  2A9E A;  1M7S A;  3TTU A;  3TTT A;  3TTW A;  3DY5 A;  4ENQ A;  3PQ8 A;  1P7Y A;  1QF7 A;  4ENR A;  2CAG A;  3ZJ4 A;  1GG9 A;  1U5U A;  2IUF A;  3PQ7 A;  3HB6 A;  1MQF A;  1F4J A;  1IPH A;  4AUN A;  3P9S A;  1QWL A;  1QWM A;  2CAH A;  1M85 A;  4ENV A;  1GWF A;  4QON A;  2ISA A;  4QOM A;  3VU3 A;  4AUE A;  4QOO A;  4QOR A;  4ENP A;  1A4E A;  3PQ5 A;  1GGF A;  2XF2 A;  4B7A A;  1CF9 A;  3PQ4 A;  4QOL A;  1QWS A; 
#chains in the Genus database with same CATH topology
 4ENT A;  4E37 A;  5BV2 P;  1DGB A;  3P9R A;  8CAT A;  1SY7 A;  2XQ1 A;  4AUL A;  2IQF A;  1P81 A;  4ENS A;  1GGK A;  3E4Y A;  3TTV A;  4QOQ A;  1NM0 A;  4AUM A;  4ENU A;  1P80 A;  1H6N A;  3RE8 A;  1TH2 A;  1GGE A;  4B7F A;  1TH4 A;  1GGH A;  3ZJ5 A;  1GGJ A;  4B31 A;  1DGF A;  3PQ6 A;  3P9P A;  1H7K A;  1HBZ A;  4AJ9 A;  4B40 A;  3PQ3 A;  3RGP A;  4BIM A;  3EJ6 A;  2J2M A;  3E4W A;  4B5K A;  1SI8 A;  1TGU A;  3PQ2 A;  3TTX A;  1GWH A;  1GWE A;  4QOP A;  4CAB A;  4B7G A;  1P7Z A;  4B2Y A;  1QQW A;  1E93 A;  4ENW A;  1DGG A;  4BFL A;  3NWL A;  3P9Q A;  2A9E A;  4BLC A;  1M7S A;  3TTU A;  3TTT A;  4B7H A;  3TTW A;  3DY5 A;  4ENQ A;  3PQ8 A;  1TH3 A;  5GKN A;  1P7Y A;  1QF7 A;  3RGS A;  4ENR A;  7CAT A;  2CAG A;  3ZJ4 A;  1GG9 A;  1U5U A;  2IUF A;  3PQ7 A;  3HB6 A;  1MQF A;  1F4J A;  1IPH A;  4AUN A;  3P9S A;  1QWL A;  1QWM A;  2CAH A;  1M85 A;  4ENV A;  1GWF A;  4QON A;  2ISA A;  4QOM A;  3VU3 A;  4AUE A;  4QOO A;  4QOR A;  4ENP A;  1A4E A;  3PQ5 A;  3J7B A;  1DGH B;  1GGF A;  2XF2 A;  4B7A A;  1DGH A;  1CF9 A;  3PQ4 A;  4QOL A;  1QWS A; 
#chains in the Genus database with same CATH homology
 4ENT A;  4E37 A;  5BV2 P;  3P9R A;  1SY7 A;  2XQ1 A;  4AUL A;  2IQF A;  1P81 A;  4ENS A;  1GGK A;  3TTV A;  4QOQ A;  1NM0 A;  4AUM A;  4ENU A;  1P80 A;  1H6N A;  1GGE A;  1GGH A;  3ZJ5 A;  1GGJ A;  4B31 A;  3PQ6 A;  3P9P A;  1H7K A;  1HBZ A;  4AJ9 A;  4B40 A;  3PQ3 A;  4BIM A;  3EJ6 A;  2J2M A;  4B5K A;  1SI8 A;  3PQ2 A;  3TTX A;  1GWH A;  1GWE A;  4QOP A;  4CAB A;  1P7Z A;  4B2Y A;  1E93 A;  4ENW A;  4BFL A;  3P9Q A;  2A9E A;  1M7S A;  3TTU A;  3TTT A;  3TTW A;  3DY5 A;  4ENQ A;  3PQ8 A;  1P7Y A;  1QF7 A;  4ENR A;  2CAG A;  3ZJ4 A;  1GG9 A;  1U5U A;  2IUF A;  3PQ7 A;  3HB6 A;  1MQF A;  1F4J A;  1IPH A;  4AUN A;  3P9S A;  1QWL A;  1QWM A;  2CAH A;  1M85 A;  4ENV A;  1GWF A;  4QON A;  2ISA A;  4QOM A;  3VU3 A;  4AUE A;  4QOO A;  4QOR A;  4ENP A;  1A4E A;  3PQ5 A;  1GGF A;  2XF2 A;  4B7A A;  1CF9 A;  3PQ4 A;  4QOL A;  1QWS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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