3A2ZA

E. coli gsp amidase cys59 sulfenic acid
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
190
structure length
190
Chain Sequence
QDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Protein S-thiolation by Glutathionylspermidine (Gsp): the role of Escherichia coli Gsp synthetASE/amidase in redox regulation
pubmed doi rcsb
molecule tags Hydrolase, ligase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 47
structure length 190
sequence length 190
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2009-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3a2zA00
4CSHA 3A2YA 2IO9A 3PVQA 4HZ9A 2K3AA 3H41A 2IOBA 2VOBA 2IF6A 4OLKA 4Q4TA 3A30A 3PBIA 4FGIA 4LJ1A 4CT3A 4FQAA 4FGEA 4HPEA 3VPJA 2IO7A 2K1GA 3PBCA 4FQBA 4JXBA 4F0VA 3I86A 4FDYA 2VPSA 4F4MA 4F0WA 4EOBA 3NPFA 4EQ8A 3S0QA 2VPMA 4HZBA 2IO8A 2LRJA 3A2ZA 4Q4NA 3VPIA 4Q4GX 2XIVA 4CGKA 3M1UA 2EVRA 3GT2A 3O98A 4R0KA 2IOAA 4EQAA 4FGDA 3NE0A 2HBWA 2FG0A 3KW0A
chains in the Genus database with same CATH superfamily
4CSHA 2WP7A 3A2YA 2IO9A 3PVQA 4HZ9A 4J32A 4JURA 2K3AA 3H41A 4HFKA 2IOBA 2VOBA 3EBQA 2IF6A 4OLKA 4Q4TA 3A30A 3PBIA 4FGIA 4LJ1A 4CT3A 4FQAA 4FGEA 4HPEA 3VPJA 2IO7A 2K1GA 3PBCA 4FQBA 4JXBA 4F0VA 3I86A 4FDYA 2VPSA 4HFFA 4F4MA 4F0WA 4J30A 4EOBA 3NPFA 4EQ8A 3S0QA 2VPMA 4HZBA 2IO8A 2LRJA 3A2ZA 4HFLA 4Q4NA 3VPIA 4Q4GX 2XIVA 4CGKA 3M1UA 2EVRA 3GT2A 3O98A 4R0KA 2IOAA 4EQAA 4FGDA 3NE0A 2HBWA 2FG0A 3KW0A
chains in the Genus database with same CATH topology
4CSHA 3A2YA 2IO9A 3PVQA 4HZ9A 2K3AA 3H41A 2IOBA 2VOBA 2IF6A 4OLKA 4Q4TA 3A30A 3PBIA 4FGIA 4LJ1A 4CT3A 4FQAA 4FGEA 4HPEA 3VPJA 2IO7A 2K1GA 3PBCA 4FQBA 4JXBA 4F0VA 3I86A 4FDYA 2VPSA 4F4MA 4F0WA 4EOBA 3NPFA 4EQ8A 3S0QA 2VPMA 4HZBA 2IO8A 2LRJA 3A2ZA 4Q4NA 3VPIA 4Q4GX 2XIVA 4CGKA 3M1UA 2EVRA 3GT2A 3O98A 4R0KA 2IOAA 4EQAA 4FGDA 3NE0A 2HBWA 2FG0A 3KW0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CSH A;  3A2Y A;  2IO9 A;  3PVQ A;  4HZ9 A;  2K3A A;  3H41 A;  2IOB A;  2VOB A;  2IF6 A;  4OLK A;  4Q4T A;  3A30 A;  3PBI A;  4FGI A;  4LJ1 A;  4CT3 A;  4FQA A;  4FGE A;  4HPE A;  3VPJ A;  2IO7 A;  2K1G A;  3PBC A;  4FQB A;  4JXB A;  4F0V A;  3I86 A;  4FDY A;  2VPS A;  4F4M A;  4F0W A;  4EOB A;  3NPF A;  4EQ8 A;  3S0Q A;  2VPM A;  4HZB A;  2IO8 A;  2LRJ A;  3A2Z A;  4Q4N A;  3VPI A;  4Q4G X;  2XIV A;  4CGK A;  3M1U A;  2EVR A;  3GT2 A;  3O98 A;  4R0K A;  2IOA A;  4EQA A;  4FGD A;  3NE0 A;  2HBW A;  2FG0 A;  3KW0 A; 
#chains in the Genus database with same CATH topology
 4CSH A;  2WP7 A;  3A2Y A;  2IO9 A;  3PVQ A;  4HZ9 A;  4J32 A;  4JUR A;  2K3A A;  3H41 A;  4HFK A;  2IOB A;  2VOB A;  3EBQ A;  2IF6 A;  4OLK A;  4Q4T A;  3A30 A;  3PBI A;  4FGI A;  4LJ1 A;  4CT3 A;  4FQA A;  4FGE A;  4HPE A;  3VPJ A;  2IO7 A;  2K1G A;  3PBC A;  4FQB A;  4JXB A;  4F0V A;  3I86 A;  4FDY A;  2VPS A;  4HFF A;  4F4M A;  4F0W A;  4J30 A;  4EOB A;  3NPF A;  4EQ8 A;  3S0Q A;  2VPM A;  4HZB A;  2IO8 A;  2LRJ A;  3A2Z A;  4HFL A;  4Q4N A;  3VPI A;  4Q4G X;  2XIV A;  4CGK A;  3M1U A;  2EVR A;  3GT2 A;  3O98 A;  4R0K A;  2IOA A;  4EQA A;  4FGD A;  3NE0 A;  2HBW A;  2FG0 A;  3KW0 A; 
#chains in the Genus database with same CATH homology
 4CSH A;  3A2Y A;  2IO9 A;  3PVQ A;  4HZ9 A;  2K3A A;  3H41 A;  2IOB A;  2VOB A;  2IF6 A;  4OLK A;  4Q4T A;  3A30 A;  3PBI A;  4FGI A;  4LJ1 A;  4CT3 A;  4FQA A;  4FGE A;  4HPE A;  3VPJ A;  2IO7 A;  2K1G A;  3PBC A;  4FQB A;  4JXB A;  4F0V A;  3I86 A;  4FDY A;  2VPS A;  4F4M A;  4F0W A;  4EOB A;  3NPF A;  4EQ8 A;  3S0Q A;  2VPM A;  4HZB A;  2IO8 A;  2LRJ A;  3A2Z A;  4Q4N A;  3VPI A;  4Q4G X;  2XIV A;  4CGK A;  3M1U A;  2EVR A;  3GT2 A;  3O98 A;  4R0K A;  2IOA A;  4EQA A;  4FGD A;  3NE0 A;  2HBW A;  2FG0 A;  3KW0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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