3A30A

E. coli gsp amidase c59 acetate modification
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
186
structure length
179
Chain Sequence
QDAPFGTLLGYAPGGVAIYSSDYSSDDAVFRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Protein S-thiolation by Glutathionylspermidine (Gsp): the role of Escherichia coli Gsp synthetASE/amidase in redox regulation
pubmed doi rcsb
molecule tags Hydrolase, ligase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 43
structure length 179
sequence length 186
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2009-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3a30A00
2FG0A 3O98A 4LJ1A 3VPJA 4HZBA 4CSHA 2IO9A 4FGDA 4F0WA 4R0KA 3KW0A 2VPMA 3GT2A 3A2ZA 4F0VA 4EQAA 3PBCA 4EOBA 4FQBA 4HZ9A 4F4MA 4HPEA 2IO7A 3A2YA 4Q4GX 2VPSA 4JXBA 4FQAA 2IOAA 2K1GA 3H41A 3PBIA 2K3AA 4FGEA 3I86A 3NPFA 3A30A 3M1UA 4OLKA 4CT3A 2IF6A 2HBWA 2XIVA 2IO8A 2IOBA 4FGIA 2VOBA 3VPIA 4CGKA 2LRJA 4Q4NA 4Q4TA 3NE0A 3PVQA 3S0QA 2EVRA 4FDYA 4EQ8A
chains in the Genus database with same CATH superfamily
2FG0A 3O98A 4LJ1A 3VPJA 4HZBA 4HFLA 4CSHA 2IO9A 4FGDA 4F0WA 4R0KA 3KW0A 2VPMA 3A2ZA 3GT2A 4F0VA 4EQAA 3PBCA 4EOBA 4FQBA 4HZ9A 4J32A 4JURA 4F4MA 4HPEA 2IO7A 3A2YA 2WP7A 4Q4GX 2VPSA 4JXBA 4FQAA 2IOAA 2K1GA 4HFFA 4HFKA 3H41A 3PBIA 3EBQA 2K3AA 4FGEA 3I86A 3NPFA 3A30A 3M1UA 4OLKA 4CT3A 2IF6A 2HBWA 2XIVA 2IO8A 2IOBA 4FGIA 2VOBA 3VPIA 4CGKA 2LRJA 4Q4NA 4Q4TA 3NE0A 3PVQA 3S0QA 2EVRA 4FDYA 4J30A 4EQ8A
chains in the Genus database with same CATH topology
2FG0A 3O98A 4LJ1A 3VPJA 4HZBA 4CSHA 2IO9A 4FGDA 4F0WA 4R0KA 3KW0A 2VPMA 3GT2A 3A2ZA 4F0VA 4EQAA 3PBCA 4EOBA 4FQBA 4HZ9A 4F4MA 4HPEA 2IO7A 3A2YA 4Q4GX 2VPSA 4JXBA 4FQAA 2IOAA 2K1GA 3H41A 3PBIA 2K3AA 4FGEA 3I86A 3NPFA 3A30A 3M1UA 4OLKA 4CT3A 2IF6A 2HBWA 2XIVA 2IO8A 2IOBA 4FGIA 2VOBA 3VPIA 4CGKA 2LRJA 4Q4NA 4Q4TA 3NE0A 3PVQA 3S0QA 2EVRA 4FDYA 4EQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FG0 A;  3O98 A;  4LJ1 A;  3VPJ A;  4HZB A;  4CSH A;  2IO9 A;  4FGD A;  4F0W A;  4R0K A;  3KW0 A;  2VPM A;  3GT2 A;  3A2Z A;  4F0V A;  4EQA A;  3PBC A;  4EOB A;  4FQB A;  4HZ9 A;  4F4M A;  4HPE A;  2IO7 A;  3A2Y A;  4Q4G X;  2VPS A;  4JXB A;  4FQA A;  2IOA A;  2K1G A;  3H41 A;  3PBI A;  2K3A A;  4FGE A;  3I86 A;  3NPF A;  3A30 A;  3M1U A;  4OLK A;  4CT3 A;  2IF6 A;  2HBW A;  2XIV A;  2IO8 A;  2IOB A;  4FGI A;  2VOB A;  3VPI A;  4CGK A;  2LRJ A;  4Q4N A;  4Q4T A;  3NE0 A;  3PVQ A;  3S0Q A;  2EVR A;  4FDY A;  4EQ8 A; 
#chains in the Genus database with same CATH topology
 2FG0 A;  3O98 A;  4LJ1 A;  3VPJ A;  4HZB A;  4HFL A;  4CSH A;  2IO9 A;  4FGD A;  4F0W A;  4R0K A;  3KW0 A;  2VPM A;  3A2Z A;  3GT2 A;  4F0V A;  4EQA A;  3PBC A;  4EOB A;  4FQB A;  4HZ9 A;  4J32 A;  4JUR A;  4F4M A;  4HPE A;  2IO7 A;  3A2Y A;  2WP7 A;  4Q4G X;  2VPS A;  4JXB A;  4FQA A;  2IOA A;  2K1G A;  4HFF A;  4HFK A;  3H41 A;  3PBI A;  3EBQ A;  2K3A A;  4FGE A;  3I86 A;  3NPF A;  3A30 A;  3M1U A;  4OLK A;  4CT3 A;  2IF6 A;  2HBW A;  2XIV A;  2IO8 A;  2IOB A;  4FGI A;  2VOB A;  3VPI A;  4CGK A;  2LRJ A;  4Q4N A;  4Q4T A;  3NE0 A;  3PVQ A;  3S0Q A;  2EVR A;  4FDY A;  4J30 A;  4EQ8 A; 
#chains in the Genus database with same CATH homology
 2FG0 A;  3O98 A;  4LJ1 A;  3VPJ A;  4HZB A;  4CSH A;  2IO9 A;  4FGD A;  4F0W A;  4R0K A;  3KW0 A;  2VPM A;  3GT2 A;  3A2Z A;  4F0V A;  4EQA A;  3PBC A;  4EOB A;  4FQB A;  4HZ9 A;  4F4M A;  4HPE A;  2IO7 A;  3A2Y A;  4Q4G X;  2VPS A;  4JXB A;  4FQA A;  2IOA A;  2K1G A;  3H41 A;  3PBI A;  2K3A A;  4FGE A;  3I86 A;  3NPF A;  3A30 A;  3M1U A;  4OLK A;  4CT3 A;  2IF6 A;  2HBW A;  2XIV A;  2IO8 A;  2IOB A;  4FGI A;  2VOB A;  3VPI A;  4CGK A;  2LRJ A;  4Q4N A;  4Q4T A;  3NE0 A;  3PVQ A;  3S0Q A;  2EVR A;  4FDY A;  4EQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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