3B49A

Crystal structure of an uncharacterized conserved protein from listeria innocua
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
204
structure length
204
Chain Sequence
KIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFSEEVHTVAEMHQFMETEGLRNDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an uncharacterized conserved protein from Listeria innocua.
rcsb
molecule tags Structural genomics, unknown function
source organism Listeria innocua clip11262
molecule keywords Lin2189 protein
total genus 50
structure length 204
sequence length 204
ec nomenclature
pdb deposition date 2007-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06445 GyrI-like GyrI-like small molecule binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 3b49A00
5GQQA 5KAWA 3D6ZA 3D6YA 5KAVA 3LURA 1D5YA 2KCUA 4AYZB 5KAUA 4AYZA 3Q5RA 3Q5PA 3IAOA 2HVAA 3R8KA 2BOWA 3GK6A 2GOVA 1R8EA 5KAXA 3E0HA 1EXIA 3D70A 1BOWA 4B0YA 4A1MA 3D71A 5KCBA 3Q3DA 3B49A 3R8JA 3Q5SA 1EXJA 5KATA 3Q1MA 1JYHA 3Q2YA
chains in the Genus database with same CATH superfamily
5GQQA 5KAWA 3D6ZA 3D6YA 5KAVA 3LURA 1D5YA 2KCUA 4AYZB 5KAUA 4AYZA 3Q5RA 3Q5PA 3IAOA 2HVAA 3R8KA 2BOWA 3GK6A 2GOVA 1R8EA 5KAXA 3E0HA 1EXIA 3D70A 1BOWA 4B0YA 4A1MA 3D71A 5KCBA 3Q3DA 3B49A 3R8JA 3Q5SA 1EXJA 5KATA 3Q1MA 1JYHA 3Q2YA
chains in the Genus database with same CATH topology
5GQQA 5KAWA 3D6ZA 3D6YA 5KAVA 3LURA 1D5YA 2KCUA 4AYZB 5KAUA 4AYZA 3Q5RA 3Q5PA 3IAOA 2HVAA 3R8KA 2BOWA 3GK6A 2GOVA 1R8EA 5KAXA 3E0HA 1EXIA 3D70A 1BOWA 4B0YA 4A1MA 3D71A 5KCBA 3Q3DA 3B49A 3R8JA 3Q5SA 1EXJA 5KATA 3Q1MA 1JYHA 3Q2YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GQQ A;  5KAW A;  3D6Z A;  3D6Y A;  5KAV A;  3LUR A;  1D5Y A;  2KCU A;  4AYZ B;  5KAU A;  4AYZ A;  3Q5R A;  3Q5P A;  3IAO A;  2HVA A;  3R8K A;  2BOW A;  3GK6 A;  2GOV A;  1R8E A;  5KAX A;  3E0H A;  1EXI A;  3D70 A;  1BOW A;  4B0Y A;  4A1M A;  3D71 A;  5KCB A;  3Q3D A;  3B49 A;  3R8J A;  3Q5S A;  1EXJ A;  5KAT A;  3Q1M A;  1JYH A;  3Q2Y A; 
#chains in the Genus database with same CATH topology
 5GQQ A;  5KAW A;  3D6Z A;  3D6Y A;  5KAV A;  3LUR A;  1D5Y A;  2KCU A;  4AYZ B;  5KAU A;  4AYZ A;  3Q5R A;  3Q5P A;  3IAO A;  2HVA A;  3R8K A;  2BOW A;  3GK6 A;  2GOV A;  1R8E A;  5KAX A;  3E0H A;  1EXI A;  3D70 A;  1BOW A;  4B0Y A;  4A1M A;  3D71 A;  5KCB A;  3Q3D A;  3B49 A;  3R8J A;  3Q5S A;  1EXJ A;  5KAT A;  3Q1M A;  1JYH A;  3Q2Y A; 
#chains in the Genus database with same CATH homology
 5GQQ A;  5KAW A;  3D6Z A;  3D6Y A;  5KAV A;  3LUR A;  1D5Y A;  2KCU A;  4AYZ B;  5KAU A;  4AYZ A;  3Q5R A;  3Q5P A;  3IAO A;  2HVA A;  3R8K A;  2BOW A;  3GK6 A;  2GOV A;  1R8E A;  5KAX A;  3E0H A;  1EXI A;  3D70 A;  1BOW A;  4B0Y A;  4A1M A;  3D71 A;  5KCB A;  3Q3D A;  3B49 A;  3R8J A;  3Q5S A;  1EXJ A;  5KAT A;  3Q1M A;  1JYH A;  3Q2Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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