3EBQA

Crystal structure of human pppde1
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
144
structure length
144
Chain Sequence
NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Human PPPDE1
rcsb
molecule tags Hydrolase
source organism Homo sapiens
molecule keywords MOLECULE: PPPDE1 (PERMUTED PAPAIN FOLD PEPTIDASES OF DSRNA V
total genus 41
structure length 144
sequence length 144
ec nomenclature ec 3.4.22.-:
pdb deposition date 2008-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05903 Peptidase_C97 PPPDE putative peptidase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.30 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 3ebqA00
3EBQA 2WP7A
chains in the Genus database with same CATH superfamily
4FGEA 3H41A 3PBCA 2EVRA 3NPFA 2WP7A 2LRJA 2IF6A 3I86A 3PVQA 4FDYA 3VPIA 3M1UA 2IOBA 4LJ1A 4Q4NA 4F0WA 2K1GA 4CGKA 4JURA 2IO8A 3NE0A 4FGDA 4R0KA 2K3AA 3EBQA 4FQAA 3GT2A 4Q4TA 2IOAA 4HZBA 2XIVA 2FG0A 4HZ9A 4Q4GX 2IO9A 2VPSA 4F4MA 3A30A 3A2YA 4EQAA 4JXBA 3A2ZA 3PBIA 4F0VA 3S0QA 4CSHA 4CT3A 3O98A 4HFKA 4J30A 4HPEA 4J32A 4OLKA 3VPJA 2VOBA 4FQBA 4FGIA 4EQ8A 2HBWA 2IO7A 4HFFA 2VPMA 4HFLA 4EOBA 3KW0A
chains in the Genus database with same CATH topology
4HFKA 4JURA 4J30A 2WP7A 4J32A 3EBQA 4HFFA 4HFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EBQ A;  2WP7 A; 
#chains in the Genus database with same CATH topology
 4FGE A;  3H41 A;  3PBC A;  2EVR A;  3NPF A;  2WP7 A;  2LRJ A;  2IF6 A;  3I86 A;  3PVQ A;  4FDY A;  3VPI A;  3M1U A;  2IOB A;  4LJ1 A;  4Q4N A;  4F0W A;  2K1G A;  4CGK A;  4JUR A;  2IO8 A;  3NE0 A;  4FGD A;  4R0K A;  2K3A A;  3EBQ A;  4FQA A;  3GT2 A;  4Q4T A;  2IOA A;  4HZB A;  2XIV A;  2FG0 A;  4HZ9 A;  4Q4G X;  2IO9 A;  2VPS A;  4F4M A;  3A30 A;  3A2Y A;  4EQA A;  4JXB A;  3A2Z A;  3PBI A;  4F0V A;  3S0Q A;  4CSH A;  4CT3 A;  3O98 A;  4HFK A;  4J30 A;  4HPE A;  4J32 A;  4OLK A;  3VPJ A;  2VOB A;  4FQB A;  4FGI A;  4EQ8 A;  2HBW A;  2IO7 A;  4HFF A;  2VPM A;  4HFL A;  4EOB A;  3KW0 A; 
#chains in the Genus database with same CATH homology
 4HFK A;  4JUR A;  4J30 A;  2WP7 A;  4J32 A;  3EBQ A;  4HFF A;  4HFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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