3GT2A

Crystal structure of the p60 domain from m. avium paratuberculosis antigen map1272c
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
135
structure length
135
Chain Sequence
GVRAMDYQQATDVVIARGLSQRGVPFSWAGGGINGPTRGTGTGANTVGFDASGLMQYAYAGAGIKLPRSSGAMYRVGQKILPQQARKGDLIFYGPEGTQSVAMYLGNNQMLEVGDVVQVSPVRTAGMAPYMVRVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of Two P60-Family Antigens from Mycobacterium Avium Paratuberculosis
rcsb
molecule tags Unknown function
source organism Mycobacterium avium subsp. paratuberculosis
molecule keywords Putative uncharacterized protein
total genus 28
structure length 135
sequence length 135
ec nomenclature
pdb deposition date 2009-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3gt2A00
3NPFA 2IO7A 2IO8A 4CGKA 4FDYA 3O98A 4HZ9A 4HZBA 3I86A 3NE0A 4FQBA 2HBWA 3H41A 4EQ8A 2IOBA 2VPSA 4HPEA 4LJ1A 2XIVA 3A2YA 4FGIA 3KW0A 3PVQA 4Q4NA 4F0WA 4F0VA 4EQAA 4JXBA 3A2ZA 3S0QA 2VOBA 2IO9A 2LRJA 3PBIA 3PBCA 4FGEA 3VPJA 4EOBA 3A30A 3M1UA 2IF6A 4FQAA 4OLKA 2VPMA 4CSHA 4CT3A 2EVRA 2FG0A 3VPIA 4R0KA 2K3AA 4FGDA 4Q4TA 3GT2A 4Q4GX 2K1GA 4F4MA 2IOAA
chains in the Genus database with same CATH superfamily
3NPFA 2IO7A 2IO8A 4CGKA 4FDYA 3O98A 4HZ9A 4HZBA 3I86A 3NE0A 4HFKA 4FQBA 2HBWA 3H41A 4EQ8A 2IOBA 2VPSA 4HPEA 4LJ1A 4JURA 2WP7A 2XIVA 3A2YA 4FGIA 4J30A 3KW0A 3PVQA 4Q4NA 4F0WA 4F0VA 4EQAA 3EBQA 4JXBA 3A2ZA 3S0QA 4J32A 2VOBA 2IO9A 2LRJA 3PBIA 3PBCA 4FGEA 3VPJA 4EOBA 3A30A 3M1UA 4HFLA 2IF6A 4FQAA 4OLKA 2VPMA 4CSHA 4CT3A 2EVRA 2FG0A 4HFFA 3VPIA 4R0KA 2K3AA 4FGDA 4Q4TA 3GT2A 4Q4GX 2K1GA 4F4MA 2IOAA
chains in the Genus database with same CATH topology
3NPFA 2IO7A 2IO8A 4CGKA 4FDYA 3O98A 4HZ9A 4HZBA 3I86A 3NE0A 4FQBA 2HBWA 3H41A 4EQ8A 2IOBA 2VPSA 4HPEA 4LJ1A 2XIVA 3A2YA 4FGIA 3KW0A 3PVQA 4Q4NA 4F0WA 4F0VA 4EQAA 4JXBA 3A2ZA 3S0QA 2VOBA 2IO9A 2LRJA 3PBIA 3PBCA 4FGEA 3VPJA 4EOBA 3A30A 3M1UA 2IF6A 4FQAA 4OLKA 2VPMA 4CSHA 4CT3A 2EVRA 2FG0A 3VPIA 4R0KA 2K3AA 4FGDA 4Q4TA 3GT2A 4Q4GX 2K1GA 4F4MA 2IOAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NPF A;  2IO7 A;  2IO8 A;  4CGK A;  4FDY A;  3O98 A;  4HZ9 A;  4HZB A;  3I86 A;  3NE0 A;  4FQB A;  2HBW A;  3H41 A;  4EQ8 A;  2IOB A;  2VPS A;  4HPE A;  4LJ1 A;  2XIV A;  3A2Y A;  4FGI A;  3KW0 A;  3PVQ A;  4Q4N A;  4F0W A;  4F0V A;  4EQA A;  4JXB A;  3A2Z A;  3S0Q A;  2VOB A;  2IO9 A;  2LRJ A;  3PBI A;  3PBC A;  4FGE A;  3VPJ A;  4EOB A;  3A30 A;  3M1U A;  2IF6 A;  4FQA A;  4OLK A;  2VPM A;  4CSH A;  4CT3 A;  2EVR A;  2FG0 A;  3VPI A;  4R0K A;  2K3A A;  4FGD A;  4Q4T A;  3GT2 A;  4Q4G X;  2K1G A;  4F4M A;  2IOA A; 
#chains in the Genus database with same CATH topology
 3NPF A;  2IO7 A;  2IO8 A;  4CGK A;  4FDY A;  3O98 A;  4HZ9 A;  4HZB A;  3I86 A;  3NE0 A;  4HFK A;  4FQB A;  2HBW A;  3H41 A;  4EQ8 A;  2IOB A;  2VPS A;  4HPE A;  4LJ1 A;  4JUR A;  2WP7 A;  2XIV A;  3A2Y A;  4FGI A;  4J30 A;  3KW0 A;  3PVQ A;  4Q4N A;  4F0W A;  4F0V A;  4EQA A;  3EBQ A;  4JXB A;  3A2Z A;  3S0Q A;  4J32 A;  2VOB A;  2IO9 A;  2LRJ A;  3PBI A;  3PBC A;  4FGE A;  3VPJ A;  4EOB A;  3A30 A;  3M1U A;  4HFL A;  2IF6 A;  4FQA A;  4OLK A;  2VPM A;  4CSH A;  4CT3 A;  2EVR A;  2FG0 A;  4HFF A;  3VPI A;  4R0K A;  2K3A A;  4FGD A;  4Q4T A;  3GT2 A;  4Q4G X;  2K1G A;  4F4M A;  2IOA A; 
#chains in the Genus database with same CATH homology
 3NPF A;  2IO7 A;  2IO8 A;  4CGK A;  4FDY A;  3O98 A;  4HZ9 A;  4HZB A;  3I86 A;  3NE0 A;  4FQB A;  2HBW A;  3H41 A;  4EQ8 A;  2IOB A;  2VPS A;  4HPE A;  4LJ1 A;  2XIV A;  3A2Y A;  4FGI A;  3KW0 A;  3PVQ A;  4Q4N A;  4F0W A;  4F0V A;  4EQA A;  4JXB A;  3A2Z A;  3S0Q A;  2VOB A;  2IO9 A;  2LRJ A;  3PBI A;  3PBC A;  4FGE A;  3VPJ A;  4EOB A;  3A30 A;  3M1U A;  2IF6 A;  4FQA A;  4OLK A;  2VPM A;  4CSH A;  4CT3 A;  2EVR A;  2FG0 A;  3VPI A;  4R0K A;  2K3A A;  4FGD A;  4Q4T A;  3GT2 A;  4Q4G X;  2K1G A;  4F4M A;  2IOA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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