3I86A

Crystal structure of the p60 domain from m. avium subspecies paratuberculosis antigen map1204
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
136
structure length
136
Chain Sequence
VYGRQAIEYVIKRMGSQMGVPYSWGGGSLDGPSKGVGDGANITGFDCSGLMRYGFAGVGVLIPRFSGDQYNAGRHIPQDQARRGDLIFYGPGGSQHVTMYLGNGQMLEASGSAGKVTVSPVRKPGMTPFLTRIIEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Atypical structural features of two P60 family members from Mycobacterium avium subspecies paratuberculosis
rcsb
molecule tags Hydrolase
source organism Mycobacterium avium subsp. paratuberculosis
molecule keywords Putative uncharacterized protein
total genus 38
structure length 136
sequence length 136
chains with identical sequence B
ec nomenclature ec 3.4.19.11: Gamma-D-glutamyl-meso-diaminopimelate peptidase.
pdb deposition date 2009-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3i86A00
3A2YA 4FGEA 2IO7A 2VOBA 4CT3A 2IOBA 2HBWA 2IF6A 4FQAA 4CSHA 3I86A 2XIVA 4Q4NA 4CGKA 4EOBA 4F0WA 2VPMA 3A30A 3NPFA 2IOAA 4FGDA 3KW0A 2K1GA 3S0QA 2VPSA 4FDYA 3A2ZA 4HZBA 2EVRA 2IO9A 4Q4TA 4FQBA 4HPEA 4R0KA 3H41A 2FG0A 3GT2A 3O98A 4FGIA 2LRJA 3VPJA 4F0VA 3M1UA 4LJ1A 4OLKA 4F4MA 4Q4GX 3VPIA 4EQ8A 3NE0A 3PVQA 2K3AA 4JXBA 2IO8A 4EQAA 3PBIA 3PBCA 4HZ9A
chains in the Genus database with same CATH superfamily
3A2YA 4J30A 4FGEA 2IO7A 2VOBA 4CT3A 2IOBA 2HBWA 4HFLA 2IF6A 4FQAA 4HFFA 4CSHA 3I86A 2XIVA 4Q4NA 4CGKA 4EOBA 4F0WA 2VPMA 3A30A 3NPFA 2IOAA 4FGDA 3KW0A 2K1GA 3S0QA 2WP7A 2VPSA 3EBQA 4FDYA 3A2ZA 4HZBA 2EVRA 2IO9A 4Q4TA 4FQBA 4HPEA 4R0KA 4J32A 4HFKA 3H41A 2FG0A 3GT2A 3O98A 4FGIA 2LRJA 3VPJA 4F0VA 3M1UA 4LJ1A 4OLKA 4JURA 4F4MA 4Q4GX 3VPIA 4EQ8A 3NE0A 3PVQA 2K3AA 4JXBA 2IO8A 4EQAA 3PBIA 3PBCA 4HZ9A
chains in the Genus database with same CATH topology
3A2YA 4FGEA 2IO7A 2VOBA 4CT3A 2IOBA 2HBWA 2IF6A 4FQAA 4CSHA 3I86A 2XIVA 4Q4NA 4CGKA 4EOBA 4F0WA 2VPMA 3A30A 3NPFA 2IOAA 4FGDA 3KW0A 2K1GA 3S0QA 2VPSA 4FDYA 3A2ZA 4HZBA 2EVRA 2IO9A 4Q4TA 4FQBA 4HPEA 4R0KA 3H41A 2FG0A 3GT2A 3O98A 4FGIA 2LRJA 3VPJA 4F0VA 3M1UA 4LJ1A 4OLKA 4F4MA 4Q4GX 3VPIA 4EQ8A 3NE0A 3PVQA 2K3AA 4JXBA 2IO8A 4EQAA 3PBIA 3PBCA 4HZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2Y A;  4FGE A;  2IO7 A;  2VOB A;  4CT3 A;  2IOB A;  2HBW A;  2IF6 A;  4FQA A;  4CSH A;  3I86 A;  2XIV A;  4Q4N A;  4CGK A;  4EOB A;  4F0W A;  2VPM A;  3A30 A;  3NPF A;  2IOA A;  4FGD A;  3KW0 A;  2K1G A;  3S0Q A;  2VPS A;  4FDY A;  3A2Z A;  4HZB A;  2EVR A;  2IO9 A;  4Q4T A;  4FQB A;  4HPE A;  4R0K A;  3H41 A;  2FG0 A;  3GT2 A;  3O98 A;  4FGI A;  2LRJ A;  3VPJ A;  4F0V A;  3M1U A;  4LJ1 A;  4OLK A;  4F4M A;  4Q4G X;  3VPI A;  4EQ8 A;  3NE0 A;  3PVQ A;  2K3A A;  4JXB A;  2IO8 A;  4EQA A;  3PBI A;  3PBC A;  4HZ9 A; 
#chains in the Genus database with same CATH topology
 3A2Y A;  4J30 A;  4FGE A;  2IO7 A;  2VOB A;  4CT3 A;  2IOB A;  2HBW A;  4HFL A;  2IF6 A;  4FQA A;  4HFF A;  4CSH A;  3I86 A;  2XIV A;  4Q4N A;  4CGK A;  4EOB A;  4F0W A;  2VPM A;  3A30 A;  3NPF A;  2IOA A;  4FGD A;  3KW0 A;  2K1G A;  3S0Q A;  2WP7 A;  2VPS A;  3EBQ A;  4FDY A;  3A2Z A;  4HZB A;  2EVR A;  2IO9 A;  4Q4T A;  4FQB A;  4HPE A;  4R0K A;  4J32 A;  4HFK A;  3H41 A;  2FG0 A;  3GT2 A;  3O98 A;  4FGI A;  2LRJ A;  3VPJ A;  4F0V A;  3M1U A;  4LJ1 A;  4OLK A;  4JUR A;  4F4M A;  4Q4G X;  3VPI A;  4EQ8 A;  3NE0 A;  3PVQ A;  2K3A A;  4JXB A;  2IO8 A;  4EQA A;  3PBI A;  3PBC A;  4HZ9 A; 
#chains in the Genus database with same CATH homology
 3A2Y A;  4FGE A;  2IO7 A;  2VOB A;  4CT3 A;  2IOB A;  2HBW A;  2IF6 A;  4FQA A;  4CSH A;  3I86 A;  2XIV A;  4Q4N A;  4CGK A;  4EOB A;  4F0W A;  2VPM A;  3A30 A;  3NPF A;  2IOA A;  4FGD A;  3KW0 A;  2K1G A;  3S0Q A;  2VPS A;  4FDY A;  3A2Z A;  4HZB A;  2EVR A;  2IO9 A;  4Q4T A;  4FQB A;  4HPE A;  4R0K A;  3H41 A;  2FG0 A;  3GT2 A;  3O98 A;  4FGI A;  2LRJ A;  3VPJ A;  4F0V A;  3M1U A;  4LJ1 A;  4OLK A;  4F4M A;  4Q4G X;  3VPI A;  4EQ8 A;  3NE0 A;  3PVQ A;  2K3A A;  4JXB A;  2IO8 A;  4EQA A;  3PBI A;  3PBC A;  4HZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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