3MEM | Genus

Total Genus 144

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	144
sequence length	453
structure length	453
Chain Sequence	ELPVVVQQALGDNAPGVSFRSVSQIDTGHLLRMVLLSDDQGNLQAICRRNDMLDLEALNKRLGRDLRMMQRREQVRVRQKAGLQELPALPSLTGWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARHDFAVDTANISVNLDNHAADRDQLHSAIKRFTGLRIQQRLEDTLELPPLPETAQRIIHLRVNPNAVMGDLVDVVESDPSLAAQVVSWASSSFYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLGITREQIAAQLMENWGMPDEVTLAIRYQKNPAYDGPHNVYARLLWLGRQLLTERGVALGAGESATQAVYDELGLDRELVQEQFDELVRRKDSIMAMAGMMSQ

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Marinobacter aquaeolei
publication title	Crystal structure of a Putative signal transduction protein (Maqu_0641) from MARINOBACTER AQUAEOLEI VT8 at 2.25 A resolution rcsb
molecule keywords	Putative signal transduction protein
total genus	144
structure length	453
sequence length	453
ec nomenclature
pdb deposition date	2010-03-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04073	tRNA_edit	Aminoacyl-tRNA editing domain
A	PF08668	HDOD	HDOD domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3210.10	Mainly Alpha	Orthogonal Bundle	Hypothetical protein af1432	Hypothetical protein af1432	3memA02
3.90.960.10	Alpha Beta	Alpha-Beta Complex	YbaK protein	YbaK/aminoacyl-tRNA synthetase-associated domain	3memA01

2PAUA 3MZOA 5AO4A 3CCGA 2HEKA 4QFXA 4X9EA 4TO5A 1VQRA 4TO1A 4RXSA 5AO0A 1YNBA 2O6IA 4TO3A 3KH1A 4TNYA 1YOYA 4TO0A 4TNZA 3HC1A 4QG4A 4XDSA 5TK7A 2O08A 4RXQA 4MLNA 2PARA 3I7AA 4ME4A 1VJ7A 4TNPA 1DBUA 3NQWA 4L7EA 3MEMA 4RXPA 3P3QA 3TMDA 4ZWEA 3NR1A 2DQBA 1VJFA 3IRHA 5AO2A 2Z0KA 2OGIA 4MCWA 4MLMA 4N6WA 3RF0A 4L7WA 4TO6A 2FLOA 1WDVA 2Z0XA 4TNXA 4L1JA 3U1NA 3RI0A 5TK8A 3TM8A 2DXAA 3OP6A 4QFYA 5AO3A 1XX7A 1DBXA 5AO1A 4QFZA 4BZCA 4DMBA 3TMCA 4N71A 1U6ZA 2PGSA 4LRLA 4RXOA 3LJXA 5TK9A 3BG2A 2PQ7A 4Q7HA 4ZWGA 4TO4A 1VKIA 2J3LA 4TO2A 2J3MA 2Q14A 2PAQA 4BZBA 4MDZA 3M1TA 4MZ7A 2CQZA 4R8ZA 3HI0A 3TMBA 2GZ4A 4QG1A 4TNQA 3RIJA 4QG0A 5TKAA 2CX5A 5TK6A 4TNRA 4L1JB 4RXRA 4QG2A
chains in the Genus database with same CATH superfamily

2PAUA 3MZOA 5AO4A 3CCGA 2HEKA 4QFXA 4X9EA 4TO5A 1VQRA 4TO1A 4RXSA 5AO0A 1YNBA 2O6IA 4TO3A 3KH1A 4TNYA 1YOYA 4TO0A 4TNZA 3HC1A 4QG4A 4XDSA 3KQ5A 5TK7A 2O08A 4RXQA 4MLNA 2PARA 3I7AA 4ME4A 1VJ7A 4TNPA 4QQYA 1DBUA 3NQWA 4L7EA 3MEMA 4RXPA 3P3QA 3TMDA 4ZWEA 3S4LA 3NR1A 2DQBA 1VJFA 3IRHA 5AO2A 3SK9A 2Z0KA 2OGIA 4MCWA 4MLMA 4N6WA 3RF0A 4L7WA 4TO6A 2FLOA 1WDVA 2Z0XA 3GW7A 4QQXA 4TNXA 4L1JA 3SKDA 3U1NA 3RI0A 5TK8A 3TM8A 4Q2DA 2DXAA 3OP6A 4QFYA 5AO3A 1XX7A 1DBXA 5AO1A 4QFZA 4QQWA 4BZCA 4DMBA 3TMCA 4N71A 1U6ZA 2PGSA 4LRLA 4RXOA 3LJXA 5TK9A 3BG2A 2PQ7A 4Q7HA 4Q2CA 4ZWGA 4TO4A 1VKIA 4QQZA 2J3LA 4TO2A 2J3MA 2Q14A 2PAQA 4BZBA 4MDZA 3M1TA 4MZ7A 2CQZA 4R8ZA 3HI0A 3TMBA 2GZ4A 4QG1A 4TNQA 3RIJA 4QG0A 5TKAA 2CX5A 5TK6A 4TNRA 4L1JB 4RXRA 4QG2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2PAU A;  3MZO A;  5AO4 A;  3CCG A;  2HEK A;  4QFX A;  4X9E A;  4TO5 A;  1VQR A;  4TO1 A;  4RXS A;  5AO0 A;  1YNB A;  2O6I A;  4TO3 A;  3KH1 A;  4TNY A;  1YOY A;  4TO0 A;  4TNZ A;  3HC1 A;  4QG4 A;  4XDS A;  5TK7 A;  2O08 A;  4RXQ A;  4MLN A;  2PAR A;  3I7A A;  4ME4 A;  1VJ7 A;  4TNP A;  1DBU A;  3NQW A;  4L7E A;  3MEM A;  4RXP A;  3P3Q A;  3TMD A;  4ZWE A;  3NR1 A;  2DQB A;  1VJF A;  3IRH A;  5AO2 A;  2Z0K A;  2OGI A;  4MCW A;  4MLM A;  4N6W A;  3RF0 A;  4L7W A;  4TO6 A;  2FLO A;  1WDV A;  2Z0X A;  4TNX A;  4L1J A;  3U1N A;  3RI0 A;  5TK8 A;  3TM8 A;  2DXA A;  3OP6 A;  4QFY A;  5AO3 A;  1XX7 A;  1DBX A;  5AO1 A;  4QFZ A;  4BZC A;  4DMB A;  3TMC A;  4N71 A;  1U6Z A;  2PGS A;  4LRL A;  4RXO A;  3LJX A;  5TK9 A;  3BG2 A;  2PQ7 A;  4Q7H A;  4ZWG A;  4TO4 A;  1VKI A;  2J3L A;  4TO2 A;  2J3M A;  2Q14 A;  2PAQ A;  4BZB A;  4MDZ A;  3M1T A;  4MZ7 A;  2CQZ A;  4R8Z A;  3HI0 A;  3TMB A;  2GZ4 A;  4QG1 A;  4TNQ A;  3RIJ A;  4QG0 A;  5TKA A;  2CX5 A;  5TK6 A;  4TNR A;  4L1J B;  4RXR A;  4QG2 A; 
#chains in the Genus database with same CATH topology
 2PAU A;  3MZO A;  5AO4 A;  3CCG A;  2HEK A;  4QFX A;  4X9E A;  4TO5 A;  1VQR A;  4TO1 A;  4RXS A;  5AO0 A;  1YNB A;  2O6I A;  4TO3 A;  3KH1 A;  4TNY A;  1YOY A;  4TO0 A;  4TNZ A;  3HC1 A;  4QG4 A;  4XDS A;  3KQ5 A;  5TK7 A;  2O08 A;  4RXQ A;  4MLN A;  2PAR A;  3I7A A;  4ME4 A;  1VJ7 A;  4TNP A;  4QQY A;  1DBU A;  3NQW A;  4L7E A;  3MEM A;  4RXP A;  3P3Q A;  3TMD A;  4ZWE A;  3S4L A;  3NR1 A;  2DQB A;  1VJF A;  3IRH A;  5AO2 A;  3SK9 A;  2Z0K A;  2OGI A;  4MCW A;  4MLM A;  4N6W A;  3RF0 A;  4L7W A;  4TO6 A;  2FLO A;  1WDV A;  2Z0X A;  3GW7 A;  4QQX A;  4TNX A;  4L1J A;  3SKD A;  3U1N A;  3RI0 A;  5TK8 A;  3TM8 A;  4Q2D A;  2DXA A;  3OP6 A;  4QFY A;  5AO3 A;  1XX7 A;  1DBX A;  5AO1 A;  4QFZ A;  4QQW A;  4BZC A;  4DMB A;  3TMC A;  4N71 A;  1U6Z A;  2PGS A;  4LRL A;  4RXO A;  3LJX A;  5TK9 A;  3BG2 A;  2PQ7 A;  4Q7H A;  4Q2C A;  4ZWG A;  4TO4 A;  1VKI A;  4QQZ A;  2J3L A;  4TO2 A;  2J3M A;  2Q14 A;  2PAQ A;  4BZB A;  4MDZ A;  3M1T A;  4MZ7 A;  2CQZ A;  4R8Z A;  3HI0 A;  3TMB A;  2GZ4 A;  4QG1 A;  4TNQ A;  3RIJ A;  4QG0 A;  5TKA A;  2CX5 A;  5TK6 A;  4TNR A;  4L1J B;  4RXR A;  4QG2 A; 
#chains in the Genus database with same CATH homology
 2PAU A;  3MZO A;  5AO4 A;  3CCG A;  2HEK A;  4QFX A;  4X9E A;  4TO5 A;  1VQR A;  4TO1 A;  4RXS A;  5AO0 A;  1YNB A;  2O6I A;  4TO3 A;  3KH1 A;  4TNY A;  1YOY A;  4TO0 A;  4TNZ A;  3HC1 A;  4QG4 A;  4XDS A;  3KQ5 A;  5TK7 A;  2O08 A;  4RXQ A;  4MLN A;  2PAR A;  3I7A A;  4ME4 A;  1VJ7 A;  4TNP A;  4QQY A;  1DBU A;  3NQW A;  4L7E A;  3MEM A;  4RXP A;  3P3Q A;  3TMD A;  4ZWE A;  3S4L A;  3NR1 A;  2DQB A;  1VJF A;  3IRH A;  5AO2 A;  3SK9 A;  2Z0K A;  2OGI A;  4MCW A;  4MLM A;  4N6W A;  3RF0 A;  4L7W A;  4TO6 A;  2FLO A;  1WDV A;  2Z0X A;  3GW7 A;  4QQX A;  4TNX A;  4L1J A;  3SKD A;  3U1N A;  3RI0 A;  5TK8 A;  3TM8 A;  4Q2D A;  2DXA A;  3OP6 A;  4QFY A;  5AO3 A;  1XX7 A;  1DBX A;  5AO1 A;  4QFZ A;  4QQW A;  4BZC A;  4DMB A;  3TMC A;  4N71 A;  1U6Z A;  2PGS A;  4LRL A;  4RXO A;  3LJX A;  5TK9 A;  3BG2 A;  2PQ7 A;  4Q7H A;  4Q2C A;  4ZWG A;  4TO4 A;  1VKI A;  4QQZ A;  2J3L A;  4TO2 A;  2J3M A;  2Q14 A;  2PAQ A;  4BZB A;  4MDZ A;  3M1T A;  4MZ7 A;  2CQZ A;  4R8Z A;  3HI0 A;  3TMB A;  2GZ4 A;  4QG1 A;  4TNQ A;  3RIJ A;  4QG0 A;  5TKA A;  2CX5 A;  5TK6 A;  4TNR A;  4L1J B;  4RXR A;  4QG2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3MEMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations