3NE0A

Structure and functional regulation of ripa, a mycobacterial enzyme essential for daughter cell separation
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
208
structure length
208
Chain Sequence
GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Functional Regulation of RipA, a Mycobacterial Enzyme Essential for Daughter Cell Separation.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Resuscitation promoting factor Interacting Protein A
total genus 58
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2010-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3ne0A00
4EQAA 2IO8A 4CSHA 4R0KA 4FDYA 4HPEA 3PBCA 3A2ZA 4LJ1A 2IO7A 4F0VA 4FGIA 2K1GA 2EVRA 4EQ8A 2VPSA 3VPIA 2IOBA 4Q4NA 3GT2A 4CT3A 4Q4GX 4JXBA 4HZBA 3KW0A 3PBIA 2IO9A 4Q4TA 2K3AA 2FG0A 3NE0A 4OLKA 2XIVA 3A30A 4FGDA 3I86A 4FQBA 3M1UA 2VPMA 4FGEA 4HZ9A 2IF6A 4CGKA 3NPFA 4FQAA 3O98A 3PVQA 4EOBA 4F0WA 2LRJA 3VPJA 4F4MA 2IOAA 2VOBA 3S0QA 3A2YA 3H41A 2HBWA
chains in the Genus database with same CATH superfamily
4HFLA 4EQAA 2IO8A 4CSHA 4R0KA 4FDYA 4HPEA 3PBCA 3A2ZA 4LJ1A 2IO7A 4F0VA 4FGIA 2K1GA 2EVRA 2WP7A 4EQ8A 2VPSA 3VPIA 2IOBA 4Q4NA 3GT2A 4CT3A 4Q4GX 4HFFA 4JXBA 4HZBA 3KW0A 3PBIA 4J32A 2IO9A 4HFKA 4Q4TA 2K3AA 2FG0A 3EBQA 3NE0A 4OLKA 2XIVA 3A30A 4FGDA 3I86A 4FQBA 3M1UA 2VPMA 4FGEA 4HZ9A 2IF6A 4CGKA 4J30A 3NPFA 4FQAA 3O98A 3PVQA 4EOBA 4F0WA 2LRJA 3VPJA 4JURA 4F4MA 2IOAA 2VOBA 3S0QA 3A2YA 3H41A 2HBWA
chains in the Genus database with same CATH topology
4EQAA 2IO8A 4CSHA 4R0KA 4FDYA 4HPEA 3PBCA 3A2ZA 4LJ1A 2IO7A 4F0VA 4FGIA 2K1GA 2EVRA 4EQ8A 2VPSA 3VPIA 2IOBA 4Q4NA 3GT2A 4CT3A 4Q4GX 4JXBA 4HZBA 3KW0A 3PBIA 2IO9A 4Q4TA 2K3AA 2FG0A 3NE0A 4OLKA 2XIVA 3A30A 4FGDA 3I86A 4FQBA 3M1UA 2VPMA 4FGEA 4HZ9A 2IF6A 4CGKA 3NPFA 4FQAA 3O98A 3PVQA 4EOBA 4F0WA 2LRJA 3VPJA 4F4MA 2IOAA 2VOBA 3S0QA 3A2YA 3H41A 2HBWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EQA A;  2IO8 A;  4CSH A;  4R0K A;  4FDY A;  4HPE A;  3PBC A;  3A2Z A;  4LJ1 A;  2IO7 A;  4F0V A;  4FGI A;  2K1G A;  2EVR A;  4EQ8 A;  2VPS A;  3VPI A;  2IOB A;  4Q4N A;  3GT2 A;  4CT3 A;  4Q4G X;  4JXB A;  4HZB A;  3KW0 A;  3PBI A;  2IO9 A;  4Q4T A;  2K3A A;  2FG0 A;  3NE0 A;  4OLK A;  2XIV A;  3A30 A;  4FGD A;  3I86 A;  4FQB A;  3M1U A;  2VPM A;  4FGE A;  4HZ9 A;  2IF6 A;  4CGK A;  3NPF A;  4FQA A;  3O98 A;  3PVQ A;  4EOB A;  4F0W A;  2LRJ A;  3VPJ A;  4F4M A;  2IOA A;  2VOB A;  3S0Q A;  3A2Y A;  3H41 A;  2HBW A; 
#chains in the Genus database with same CATH topology
 4HFL A;  4EQA A;  2IO8 A;  4CSH A;  4R0K A;  4FDY A;  4HPE A;  3PBC A;  3A2Z A;  4LJ1 A;  2IO7 A;  4F0V A;  4FGI A;  2K1G A;  2EVR A;  2WP7 A;  4EQ8 A;  2VPS A;  3VPI A;  2IOB A;  4Q4N A;  3GT2 A;  4CT3 A;  4Q4G X;  4HFF A;  4JXB A;  4HZB A;  3KW0 A;  3PBI A;  4J32 A;  2IO9 A;  4HFK A;  4Q4T A;  2K3A A;  2FG0 A;  3EBQ A;  3NE0 A;  4OLK A;  2XIV A;  3A30 A;  4FGD A;  3I86 A;  4FQB A;  3M1U A;  2VPM A;  4FGE A;  4HZ9 A;  2IF6 A;  4CGK A;  4J30 A;  3NPF A;  4FQA A;  3O98 A;  3PVQ A;  4EOB A;  4F0W A;  2LRJ A;  3VPJ A;  4JUR A;  4F4M A;  2IOA A;  2VOB A;  3S0Q A;  3A2Y A;  3H41 A;  2HBW A; 
#chains in the Genus database with same CATH homology
 4EQA A;  2IO8 A;  4CSH A;  4R0K A;  4FDY A;  4HPE A;  3PBC A;  3A2Z A;  4LJ1 A;  2IO7 A;  4F0V A;  4FGI A;  2K1G A;  2EVR A;  4EQ8 A;  2VPS A;  3VPI A;  2IOB A;  4Q4N A;  3GT2 A;  4CT3 A;  4Q4G X;  4JXB A;  4HZB A;  3KW0 A;  3PBI A;  2IO9 A;  4Q4T A;  2K3A A;  2FG0 A;  3NE0 A;  4OLK A;  2XIV A;  3A30 A;  4FGD A;  3I86 A;  4FQB A;  3M1U A;  2VPM A;  4FGE A;  4HZ9 A;  2IF6 A;  4CGK A;  3NPF A;  4FQA A;  3O98 A;  3PVQ A;  4EOB A;  4F0W A;  2LRJ A;  3VPJ A;  4F4M A;  2IOA A;  2VOB A;  3S0Q A;  3A2Y A;  3H41 A;  2HBW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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