3NE0A

Structure and functional regulation of ripa, a mycobacterial enzyme essential for daughter cell separation
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
208
structure length
208
Chain Sequence
GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Functional Regulation of RipA, a Mycobacterial Enzyme Essential for Daughter Cell Separation.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Resuscitation promoting factor Interacting Protein A
total genus 58
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2010-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3ne0A00
2FG0A 3PBCA 4R0KA 2LRJA 3A2YA 4JXBA 4LJ1A 4Q4NA 2IO9A 2K1GA 4FQBA 2VPSA 4FDYA 2VOBA 4EQ8A 3M1UA 3S0QA 4CSHA 2XIVA 4FGEA 4FQAA 3H41A 4HZ9A 4Q4TA 4EQAA 4FGIA 3PBIA 4HPEA 3VPIA 3GT2A 3KW0A 3VPJA 4OLKA 2IO8A 4EOBA 2K3AA 4CGKA 4F0WA 4F4MA 3A30A 4Q4GX 2IF6A 3NPFA 3A2ZA 2HBWA 2IOBA 2EVRA 3PVQA 4CT3A 4HZBA 4FGDA 2VPMA 3NE0A 3O98A 3I86A 4F0VA 2IO7A 2IOAA
chains in the Genus database with same CATH superfamily
2FG0A 3PBCA 4R0KA 2LRJA 3A2YA 4JXBA 4LJ1A 4Q4NA 4J32A 2IO9A 2K1GA 4FQBA 2VPSA 4FDYA 2VOBA 4HFFA 3M1UA 3S0QA 4CSHA 2XIVA 4FGEA 4FQAA 3H41A 4HZ9A 4Q4TA 4HFLA 4FGIA 4EQAA 3PBIA 4HPEA 3EBQA 3VPIA 3GT2A 4JURA 3KW0A 3VPJA 4OLKA 2IO8A 4J30A 4EOBA 2K3AA 4CGKA 4F0WA 4F4MA 3A30A 4Q4GX 2IF6A 4EQ8A 3NPFA 3A2ZA 2HBWA 2IOBA 2EVRA 3PVQA 4CT3A 4HZBA 4HFKA 2WP7A 4FGDA 2VPMA 3NE0A 3O98A 3I86A 4F0VA 2IO7A 2IOAA
chains in the Genus database with same CATH topology
2FG0A 3PBCA 4R0KA 2LRJA 3A2YA 4JXBA 4LJ1A 4Q4NA 2IO9A 2K1GA 4FQBA 2VPSA 4FDYA 2VOBA 4EQ8A 3M1UA 3S0QA 4CSHA 2XIVA 4FGEA 4FQAA 3H41A 4HZ9A 4Q4TA 4EQAA 4FGIA 3PBIA 4HPEA 3VPIA 3GT2A 3KW0A 3VPJA 4OLKA 2IO8A 4EOBA 2K3AA 4CGKA 4F0WA 4F4MA 3A30A 4Q4GX 2IF6A 3NPFA 3A2ZA 2HBWA 2IOBA 2EVRA 3PVQA 4CT3A 4HZBA 4FGDA 2VPMA 3NE0A 3O98A 3I86A 4F0VA 2IO7A 2IOAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FG0 A;  3PBC A;  4R0K A;  2LRJ A;  3A2Y A;  4JXB A;  4LJ1 A;  4Q4N A;  2IO9 A;  2K1G A;  4FQB A;  2VPS A;  4FDY A;  2VOB A;  4EQ8 A;  3M1U A;  3S0Q A;  4CSH A;  2XIV A;  4FGE A;  4FQA A;  3H41 A;  4HZ9 A;  4Q4T A;  4EQA A;  4FGI A;  3PBI A;  4HPE A;  3VPI A;  3GT2 A;  3KW0 A;  3VPJ A;  4OLK A;  2IO8 A;  4EOB A;  2K3A A;  4CGK A;  4F0W A;  4F4M A;  3A30 A;  4Q4G X;  2IF6 A;  3NPF A;  3A2Z A;  2HBW A;  2IOB A;  2EVR A;  3PVQ A;  4CT3 A;  4HZB A;  4FGD A;  2VPM A;  3NE0 A;  3O98 A;  3I86 A;  4F0V A;  2IO7 A;  2IOA A; 
#chains in the Genus database with same CATH topology
 2FG0 A;  3PBC A;  4R0K A;  2LRJ A;  3A2Y A;  4JXB A;  4LJ1 A;  4Q4N A;  4J32 A;  2IO9 A;  2K1G A;  4FQB A;  2VPS A;  4FDY A;  2VOB A;  4HFF A;  3M1U A;  3S0Q A;  4CSH A;  2XIV A;  4FGE A;  4FQA A;  3H41 A;  4HZ9 A;  4Q4T A;  4HFL A;  4FGI A;  4EQA A;  3PBI A;  4HPE A;  3EBQ A;  3VPI A;  3GT2 A;  4JUR A;  3KW0 A;  3VPJ A;  4OLK A;  2IO8 A;  4J30 A;  4EOB A;  2K3A A;  4CGK A;  4F0W A;  4F4M A;  3A30 A;  4Q4G X;  2IF6 A;  4EQ8 A;  3NPF A;  3A2Z A;  2HBW A;  2IOB A;  2EVR A;  3PVQ A;  4CT3 A;  4HZB A;  4HFK A;  2WP7 A;  4FGD A;  2VPM A;  3NE0 A;  3O98 A;  3I86 A;  4F0V A;  2IO7 A;  2IOA A; 
#chains in the Genus database with same CATH homology
 2FG0 A;  3PBC A;  4R0K A;  2LRJ A;  3A2Y A;  4JXB A;  4LJ1 A;  4Q4N A;  2IO9 A;  2K1G A;  4FQB A;  2VPS A;  4FDY A;  2VOB A;  4EQ8 A;  3M1U A;  3S0Q A;  4CSH A;  2XIV A;  4FGE A;  4FQA A;  3H41 A;  4HZ9 A;  4Q4T A;  4EQA A;  4FGI A;  3PBI A;  4HPE A;  3VPI A;  3GT2 A;  3KW0 A;  3VPJ A;  4OLK A;  2IO8 A;  4EOB A;  2K3A A;  4CGK A;  4F0W A;  4F4M A;  3A30 A;  4Q4G X;  2IF6 A;  3NPF A;  3A2Z A;  2HBW A;  2IOB A;  2EVR A;  3PVQ A;  4CT3 A;  4HZB A;  4FGD A;  2VPM A;  3NE0 A;  3O98 A;  3I86 A;  4F0V A;  2IO7 A;  2IOA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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