3Q0DA

Crystal structure of suvh5 sra- hemi methylated cg dna complex
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
163
structure length
145
Chain Sequence
b'QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Histone-lysine N-methyltransferase, H3 lysine-9 specific SUV
publication title A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Transferase/dna
total genus 34
structure length 145
sequence length 163
chains with identical sequence X
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2010-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02182 SAD_SRA SAD/SRA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.30 Mainly Beta Roll PUA domain-like PUA domain-like 3q0dA00
4YGIA 3Q0FA 3Q0BX 3Q0CA 3Q0DA
chains in the Genus database with same CATH superfamily
4F0PA 4PW5A 4YGIA 4F0QA 3Q0CA 2ZKGA 2ZO1B 4NJ5A 4PW6A 2ZKDA 3Q0FA 2PB7A 2ZKEA 4RZLA 3DWHA 3Q0BX 3FDEA 3F8IA 3CLZA 4PW7A 3F8JB 2ZKFA 3OLNA 3BI7A 2ZO0B 2ZO2B 4OC8A 3Q0DA 4R28A
chains in the Genus database with same CATH topology
4F0PA 4RZLA 4YGIA 4F0QA 3Q0FA 3Q0BX 3Q0CA 4OC8A 3Q0DA 4R28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YGI A;  3Q0F A;  3Q0B X;  3Q0C A;  3Q0D A; 
#chains in the Genus database with same CATH topology
 4F0P A;  4PW5 A;  4YGI A;  4F0Q A;  3Q0C A;  2ZKG A;  2ZO1 B;  4NJ5 A;  4PW6 A;  2ZKD A;  3Q0F A;  2PB7 A;  2ZKE A;  4RZL A;  3DWH A;  3Q0B X;  3FDE A;  3F8I A;  3CLZ A;  4PW7 A;  3F8J B;  2ZKF A;  3OLN A;  3BI7 A;  2ZO0 B;  2ZO2 B;  4OC8 A;  3Q0D A;  4R28 A; 
#chains in the Genus database with same CATH homology
 4F0P A;  4RZL A;  4YGI A;  4F0Q A;  3Q0F A;  3Q0B X;  3Q0C A;  4OC8 A;  3Q0D A;  4R28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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