3RRLB

Complex structure of 3-oxoadipate coa-transferase subunit a and b from helicobacter pylori 26695
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
207
structure length
207
Chain Sequence
MREAIIKRAAKELKEGMYVNLGIGLPTLVANEVSGMNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFEFSNNAMKLVELQEGVSLDQVKEKTEAEFEVRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695
rcsb
molecule tags Transferase
source organism Helicobacter pylori
molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
total genus 50
structure length 207
sequence length 207
chains with identical sequence D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2011-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3rrlB00
1O9LA 2AHWA 3RRLB 3GK7A 1M3EA 1OPEA 3CDKB 1POIB 2AHVA 5DBNB 3RRLA 1OOYA 2NRCA 3CDKA 1POIA 2OASA 1K6DA 3QDQA 2AHUA 5DBNA 1OOZA 3DLXA 2NRBA 2HJ0A 3OXOA 3EH7A 3D3UA 1XR4A 4KGBA 3K6MA
chains in the Genus database with same CATH superfamily
1O9LA 2AHWA 3RRLB 3GK7A 1M3EA 1OPEA 3CDKB 1POIB 2AHVA 5DBNB 3RRLA 1OOYA 2NRCA 3CDKA 1POIA 2OASA 1K6DA 3QDQA 2AHUA 5DBNA 1OOZA 3DLXA 2NRBA 2HJ0A 3OXOA 3EH7A 3D3UA 1XR4A 4KGBA 3K6MA
chains in the Genus database with same CATH topology
1O9LA 2AHWA 3RRLB 3GK7A 1M3EA 1OPEA 3CDKB 1POIB 2AHVA 5DBNB 3RRLA 1OOYA 2NRCA 3CDKA 1POIA 2OASA 1K6DA 3QDQA 2AHUA 5DBNA 1OOZA 3DLXA 2NRBA 2HJ0A 3OXOA 3EH7A 3D3UA 1XR4A 4KGBA 3K6MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O9L A;  2AHW A;  3RRL B;  3GK7 A;  1M3E A;  1OPE A;  3CDK B;  1POI B;  2AHV A;  5DBN B;  3RRL A;  1OOY A;  2NRC A;  3CDK A;  1POI A;  2OAS A;  1K6D A;  3QDQ A;  2AHU A;  5DBN A;  1OOZ A;  3DLX A;  2NRB A;  2HJ0 A;  3OXO A;  3EH7 A;  3D3U A;  1XR4 A;  4KGB A;  3K6M A; 
#chains in the Genus database with same CATH topology
 1O9L A;  2AHW A;  3RRL B;  3GK7 A;  1M3E A;  1OPE A;  3CDK B;  1POI B;  2AHV A;  5DBN B;  3RRL A;  1OOY A;  2NRC A;  3CDK A;  1POI A;  2OAS A;  1K6D A;  3QDQ A;  2AHU A;  5DBN A;  1OOZ A;  3DLX A;  2NRB A;  2HJ0 A;  3OXO A;  3EH7 A;  3D3U A;  1XR4 A;  4KGB A;  3K6M A; 
#chains in the Genus database with same CATH homology
 1O9L A;  2AHW A;  3RRL B;  3GK7 A;  1M3E A;  1OPE A;  3CDK B;  1POI B;  2AHV A;  5DBN B;  3RRL A;  1OOY A;  2NRC A;  3CDK A;  1POI A;  2OAS A;  1K6D A;  3QDQ A;  2AHU A;  5DBN A;  1OOZ A;  3DLX A;  2NRB A;  2HJ0 A;  3OXO A;  3EH7 A;  3D3U A;  1XR4 A;  4KGB A;  3K6M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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