3RRLB

Complex structure of 3-oxoadipate coa-transferase subunit a and b from helicobacter pylori 26695
Total Genus 50
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
207
structure length
207
Chain Sequence
MREAIIKRAAKELKEGMYVNLGIGLPTLVANEVSGMNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFEFSNNAMKLVELQEGVSLDQVKEKTEAEFEVRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (19-21)S3 (46-50)AH3 (81-85)S2 (40-42)TI2 (59-62)S6 (71-78)TI1 (42-45)S5 (68-69)TI3 (64-67)TII1 (54-57)TIV3 (55-58)S7 (95-98)TI5 (143-146)AH5 (192-198)S8 (103-104)TVIII4 (151-154)S10 (150-151)TI4 (104-107)TVIII3 (148-151)TII3 (114-117)TIV4 (115-118)AH4 (127-131)TIV5 (158-161)TVIII2 (132-135)TII4 (187-190)S9 (134-137)S11 (166-168)S12 (172-177)TIV6 (160-163)TIV7 (169-172)S13 (180-186)AH1 (2-11)AH2 (25-29)3H1 (30-32)S4 (63-64)3H2 (86-90)Updating...
connected with : NaN
molecule tags Transferase
source organism Helicobacter pylori
publication title Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695
rcsb
molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
total genus 50
structure length 207
sequence length 207
chains with identical sequence D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2011-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3rrlB00
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH superfamily
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH topology
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
#chains in the Genus database with same CATH topology
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
#chains in the Genus database with same CATH homology
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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