3RRLB

Complex structure of 3-oxoadipate coa-transferase subunit a and b from helicobacter pylori 26695
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
207
structure length
207
Chain Sequence
MREAIIKRAAKELKEGMYVNLGIGLPTLVANEVSGMNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGAKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFEFSNNAMKLVELQEGVSLDQVKEKTEAEFEVRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Complex structure of 3-oxoadipate coA-transferase subunit A and B from Helicobacter pylori 26695
rcsb
molecule tags Transferase
source organism Helicobacter pylori
molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
total genus 50
structure length 207
sequence length 207
chains with identical sequence D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2011-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3rrlB00
3K6MA 1XR4A 2OASA 3RRLB 4KGBA 2HJ0A 3DLXA 5DBNA 2NRCA 2AHUA 3GK7A 1POIA 2AHVA 3OXOA 3CDKA 1K6DA 2NRBA 1OPEA 3EH7A 5DBNB 1OOYA 3CDKB 1M3EA 3QDQA 1POIB 2AHWA 3D3UA 3RRLA 1OOZA 1O9LA
chains in the Genus database with same CATH superfamily
3K6MA 1XR4A 2OASA 3RRLB 4KGBA 2HJ0A 3DLXA 5DBNA 2NRCA 2AHUA 3GK7A 1POIA 2AHVA 3OXOA 3CDKA 1K6DA 2NRBA 1OPEA 3EH7A 5DBNB 1OOYA 3CDKB 1M3EA 3QDQA 1POIB 2AHWA 3D3UA 3RRLA 1OOZA 1O9LA
chains in the Genus database with same CATH topology
3K6MA 1XR4A 2OASA 3RRLB 4KGBA 2HJ0A 3DLXA 5DBNA 2NRCA 2AHUA 3GK7A 1POIA 2AHVA 3OXOA 3CDKA 1K6DA 2NRBA 1OPEA 3EH7A 5DBNB 1OOYA 3CDKB 1M3EA 3QDQA 1POIB 2AHWA 3D3UA 3RRLA 1OOZA 1O9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K6M A;  1XR4 A;  2OAS A;  3RRL B;  4KGB A;  2HJ0 A;  3DLX A;  5DBN A;  2NRC A;  2AHU A;  3GK7 A;  1POI A;  2AHV A;  3OXO A;  3CDK A;  1K6D A;  2NRB A;  1OPE A;  3EH7 A;  5DBN B;  1OOY A;  3CDK B;  1M3E A;  3QDQ A;  1POI B;  2AHW A;  3D3U A;  3RRL A;  1OOZ A;  1O9L A; 
#chains in the Genus database with same CATH topology
 3K6M A;  1XR4 A;  2OAS A;  3RRL B;  4KGB A;  2HJ0 A;  3DLX A;  5DBN A;  2NRC A;  2AHU A;  3GK7 A;  1POI A;  2AHV A;  3OXO A;  3CDK A;  1K6D A;  2NRB A;  1OPE A;  3EH7 A;  5DBN B;  1OOY A;  3CDK B;  1M3E A;  3QDQ A;  1POI B;  2AHW A;  3D3U A;  3RRL A;  1OOZ A;  1O9L A; 
#chains in the Genus database with same CATH homology
 3K6M A;  1XR4 A;  2OAS A;  3RRL B;  4KGB A;  2HJ0 A;  3DLX A;  5DBN A;  2NRC A;  2AHU A;  3GK7 A;  1POI A;  2AHV A;  3OXO A;  3CDK A;  1K6D A;  2NRB A;  1OPE A;  3EH7 A;  5DBN B;  1OOY A;  3CDK B;  1M3E A;  3QDQ A;  1POI B;  2AHW A;  3D3U A;  3RRL A;  1OOZ A;  1O9L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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