3VPJA

Crystal structure of type vi effector tse1 from pseudomonas aeruginosa in complex with immune protein tsi1
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
146
structure length
146
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords type VI secretion exported 1
total genus 45
structure length 146
sequence length 146
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-03-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3vpjA00
3M1UA 2EVRA 3A2ZA 4EQAA 4F4MA 2IO7A 3PBCA 4R0KA 2IF6A 4FGEA 3I86A 3NE0A 2IOAA 3O98A 4EQ8A 4F0WA 4Q4NA 4Q4TA 3PBIA 2VOBA 2FG0A 4FQAA 4Q4GX 3PVQA 3NPFA 4JXBA 2IO8A 3VPIA 3S0QA 3H41A 4HZ9A 4LJ1A 2HBWA 4EOBA 3KW0A 4HPEA 4HZBA 4CSHA 4FGDA 3A30A 2XIVA 4FQBA 3A2YA 3VPJA 2VPMA 4CGKA 4FDYA 2IOBA 4OLKA 2K1GA 2IO9A 2LRJA 2VPSA 4FGIA 4CT3A 2K3AA 3GT2A 4F0VA
chains in the Genus database with same CATH superfamily
3M1UA 2EVRA 3EBQA 4JURA 3A2ZA 4EQAA 4F4MA 2IO7A 3PBCA 4R0KA 2IF6A 4J32A 4FGEA 4J30A 3I86A 3NE0A 2IOAA 3O98A 4EQ8A 4F0WA 4Q4NA 4HFKA 4Q4TA 3PBIA 2WP7A 2VOBA 2FG0A 4FQAA 4Q4GX 3PVQA 3NPFA 4JXBA 2IO8A 3VPIA 4HFLA 3H41A 4HZ9A 4LJ1A 3S0QA 2HBWA 4EOBA 3KW0A 4HPEA 4HZBA 4CSHA 4FGDA 3A30A 2XIVA 4FQBA 3A2YA 4HFFA 2VPMA 3VPJA 4CGKA 4FDYA 2IOBA 4OLKA 2K1GA 2IO9A 2LRJA 2VPSA 4FGIA 4CT3A 2K3AA 3GT2A 4F0VA
chains in the Genus database with same CATH topology
3M1UA 2EVRA 3A2ZA 4EQAA 4F4MA 2IO7A 3PBCA 4R0KA 2IF6A 4FGEA 3I86A 3NE0A 2IOAA 3O98A 4EQ8A 4F0WA 4Q4NA 4Q4TA 3PBIA 2VOBA 2FG0A 4FQAA 4Q4GX 3PVQA 3NPFA 4JXBA 2IO8A 3VPIA 3S0QA 3H41A 4HZ9A 4LJ1A 2HBWA 4EOBA 3KW0A 4HPEA 4HZBA 4CSHA 4FGDA 3A30A 2XIVA 4FQBA 3A2YA 3VPJA 2VPMA 4CGKA 4FDYA 2IOBA 4OLKA 2K1GA 2IO9A 2LRJA 2VPSA 4FGIA 4CT3A 2K3AA 3GT2A 4F0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M1U A;  2EVR A;  3A2Z A;  4EQA A;  4F4M A;  2IO7 A;  3PBC A;  4R0K A;  2IF6 A;  4FGE A;  3I86 A;  3NE0 A;  2IOA A;  3O98 A;  4EQ8 A;  4F0W A;  4Q4N A;  4Q4T A;  3PBI A;  2VOB A;  2FG0 A;  4FQA A;  4Q4G X;  3PVQ A;  3NPF A;  4JXB A;  2IO8 A;  3VPI A;  3S0Q A;  3H41 A;  4HZ9 A;  4LJ1 A;  2HBW A;  4EOB A;  3KW0 A;  4HPE A;  4HZB A;  4CSH A;  4FGD A;  3A30 A;  2XIV A;  4FQB A;  3A2Y A;  3VPJ A;  2VPM A;  4CGK A;  4FDY A;  2IOB A;  4OLK A;  2K1G A;  2IO9 A;  2LRJ A;  2VPS A;  4FGI A;  4CT3 A;  2K3A A;  3GT2 A;  4F0V A; 
#chains in the Genus database with same CATH topology
 3M1U A;  2EVR A;  3EBQ A;  4JUR A;  3A2Z A;  4EQA A;  4F4M A;  2IO7 A;  3PBC A;  4R0K A;  2IF6 A;  4J32 A;  4FGE A;  4J30 A;  3I86 A;  3NE0 A;  2IOA A;  3O98 A;  4EQ8 A;  4F0W A;  4Q4N A;  4HFK A;  4Q4T A;  3PBI A;  2WP7 A;  2VOB A;  2FG0 A;  4FQA A;  4Q4G X;  3PVQ A;  3NPF A;  4JXB A;  2IO8 A;  3VPI A;  4HFL A;  3H41 A;  4HZ9 A;  4LJ1 A;  3S0Q A;  2HBW A;  4EOB A;  3KW0 A;  4HPE A;  4HZB A;  4CSH A;  4FGD A;  3A30 A;  2XIV A;  4FQB A;  3A2Y A;  4HFF A;  2VPM A;  3VPJ A;  4CGK A;  4FDY A;  2IOB A;  4OLK A;  2K1G A;  2IO9 A;  2LRJ A;  2VPS A;  4FGI A;  4CT3 A;  2K3A A;  3GT2 A;  4F0V A; 
#chains in the Genus database with same CATH homology
 3M1U A;  2EVR A;  3A2Z A;  4EQA A;  4F4M A;  2IO7 A;  3PBC A;  4R0K A;  2IF6 A;  4FGE A;  3I86 A;  3NE0 A;  2IOA A;  3O98 A;  4EQ8 A;  4F0W A;  4Q4N A;  4Q4T A;  3PBI A;  2VOB A;  2FG0 A;  4FQA A;  4Q4G X;  3PVQ A;  3NPF A;  4JXB A;  2IO8 A;  3VPI A;  3S0Q A;  3H41 A;  4HZ9 A;  4LJ1 A;  2HBW A;  4EOB A;  3KW0 A;  4HPE A;  4HZB A;  4CSH A;  4FGD A;  3A30 A;  2XIV A;  4FQB A;  3A2Y A;  3VPJ A;  2VPM A;  4CGK A;  4FDY A;  2IOB A;  4OLK A;  2K1G A;  2IO9 A;  2LRJ A;  2VPS A;  4FGI A;  4CT3 A;  2K3A A;  3GT2 A;  4F0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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