3VPJA

Crystal structure of type vi effector tse1 from pseudomonas aeruginosa in complex with immune protein tsi1
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
146
structure length
146
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the Pseudomonas aeruginosa type VI virulence effector Tse1 bacteriolysis and self-protection mechanisms
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords type VI secretion exported 1
total genus 45
structure length 146
sequence length 146
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-03-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 3vpjA00
2EVRA 4HZBA 4R0KA 4F4MA 4CSHA 4FGDA 4LJ1A 3A2ZA 3S0QA 3GT2A 4FQAA 4EOBA 4FGIA 4F0VA 2HBWA 4Q4TA 3PVQA 4JXBA 4EQ8A 2IO7A 3KW0A 4CGKA 2K1GA 2VPMA 3PBIA 2IOAA 3NE0A 2IOBA 4HPEA 2XIVA 3VPJA 2IO9A 2IO8A 2IF6A 4FDYA 4HZ9A 4OLKA 3A2YA 3I86A 3PBCA 4Q4GX 3NPFA 3O98A 3H41A 2VPSA 4Q4NA 4F0WA 4EQAA 2LRJA 2FG0A 2VOBA 3M1UA 4FGEA 4CT3A 3A30A 2K3AA 4FQBA 3VPIA
chains in the Genus database with same CATH superfamily
2EVRA 4HZBA 4R0KA 4F4MA 4CSHA 4FGDA 4LJ1A 3A2ZA 3S0QA 3GT2A 4FQAA 4EOBA 4FGIA 4F0VA 2HBWA 4Q4TA 3PVQA 4JXBA 4EQ8A 2IO7A 3KW0A 4CGKA 2K1GA 2VPMA 3PBIA 2IOAA 4HFLA 3NE0A 2IOBA 4HPEA 2XIVA 3VPJA 4J30A 2IO9A 2IO8A 2IF6A 2WP7A 4FDYA 4HZ9A 4OLKA 3A2YA 3I86A 3PBCA 4Q4GX 3NPFA 3O98A 3H41A 2VPSA 4JURA 4Q4NA 4HFKA 4F0WA 4EQAA 2LRJA 2FG0A 2VOBA 3M1UA 4FGEA 3EBQA 4HFFA 3A30A 2K3AA 4CT3A 4J32A 4FQBA 3VPIA
chains in the Genus database with same CATH topology
2EVRA 4HZBA 4R0KA 4F4MA 4CSHA 4FGDA 4LJ1A 3A2ZA 3S0QA 3GT2A 4FQAA 4EOBA 4FGIA 4F0VA 2HBWA 4Q4TA 3PVQA 4JXBA 4EQ8A 2IO7A 3KW0A 4CGKA 2K1GA 2VPMA 3PBIA 2IOAA 3NE0A 2IOBA 4HPEA 2XIVA 3VPJA 2IO9A 2IO8A 2IF6A 4FDYA 4HZ9A 4OLKA 3A2YA 3I86A 3PBCA 4Q4GX 3NPFA 3O98A 3H41A 2VPSA 4Q4NA 4F0WA 4EQAA 2LRJA 2FG0A 2VOBA 3M1UA 4FGEA 4CT3A 3A30A 2K3AA 4FQBA 3VPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EVR A;  4HZB A;  4R0K A;  4F4M A;  4CSH A;  4FGD A;  4LJ1 A;  3A2Z A;  3S0Q A;  3GT2 A;  4FQA A;  4EOB A;  4FGI A;  4F0V A;  2HBW A;  4Q4T A;  3PVQ A;  4JXB A;  4EQ8 A;  2IO7 A;  3KW0 A;  4CGK A;  2K1G A;  2VPM A;  3PBI A;  2IOA A;  3NE0 A;  2IOB A;  4HPE A;  2XIV A;  3VPJ A;  2IO9 A;  2IO8 A;  2IF6 A;  4FDY A;  4HZ9 A;  4OLK A;  3A2Y A;  3I86 A;  3PBC A;  4Q4G X;  3NPF A;  3O98 A;  3H41 A;  2VPS A;  4Q4N A;  4F0W A;  4EQA A;  2LRJ A;  2FG0 A;  2VOB A;  3M1U A;  4FGE A;  4CT3 A;  3A30 A;  2K3A A;  4FQB A;  3VPI A; 
#chains in the Genus database with same CATH topology
 2EVR A;  4HZB A;  4R0K A;  4F4M A;  4CSH A;  4FGD A;  4LJ1 A;  3A2Z A;  3S0Q A;  3GT2 A;  4FQA A;  4EOB A;  4FGI A;  4F0V A;  2HBW A;  4Q4T A;  3PVQ A;  4JXB A;  4EQ8 A;  2IO7 A;  3KW0 A;  4CGK A;  2K1G A;  2VPM A;  3PBI A;  2IOA A;  4HFL A;  3NE0 A;  2IOB A;  4HPE A;  2XIV A;  3VPJ A;  4J30 A;  2IO9 A;  2IO8 A;  2IF6 A;  2WP7 A;  4FDY A;  4HZ9 A;  4OLK A;  3A2Y A;  3I86 A;  3PBC A;  4Q4G X;  3NPF A;  3O98 A;  3H41 A;  2VPS A;  4JUR A;  4Q4N A;  4HFK A;  4F0W A;  4EQA A;  2LRJ A;  2FG0 A;  2VOB A;  3M1U A;  4FGE A;  3EBQ A;  4HFF A;  3A30 A;  2K3A A;  4CT3 A;  4J32 A;  4FQB A;  3VPI A; 
#chains in the Genus database with same CATH homology
 2EVR A;  4HZB A;  4R0K A;  4F4M A;  4CSH A;  4FGD A;  4LJ1 A;  3A2Z A;  3S0Q A;  3GT2 A;  4FQA A;  4EOB A;  4FGI A;  4F0V A;  2HBW A;  4Q4T A;  3PVQ A;  4JXB A;  4EQ8 A;  2IO7 A;  3KW0 A;  4CGK A;  2K1G A;  2VPM A;  3PBI A;  2IOA A;  3NE0 A;  2IOB A;  4HPE A;  2XIV A;  3VPJ A;  2IO9 A;  2IO8 A;  2IF6 A;  4FDY A;  4HZ9 A;  4OLK A;  3A2Y A;  3I86 A;  3PBC A;  4Q4G X;  3NPF A;  3O98 A;  3H41 A;  2VPS A;  4Q4N A;  4F0W A;  4EQA A;  2LRJ A;  2FG0 A;  2VOB A;  3M1U A;  4FGE A;  4CT3 A;  3A30 A;  2K3A A;  4FQB A;  3VPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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