4A1M | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	184
structure length	184
Chain Sequence	NSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPPMKPYGRRNEVWLVKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d037a266d165fa5d4f79a19/pdb.gz): 2277 ms

reading 184 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

184 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:183});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Heme-binding protein
source organism	Mus musculus
publication title	The NMR Structure of Protoporphyrin-Ix Bound Murine P22Hbp rcsb
molecule keywords	HEME-BINDING PROTEIN 1
total genus	25
structure length	184
sequence length	184
ec nomenclature
pdb deposition date	2011-09-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04832	SOUL	SOUL heme-binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.20.80.10	Alpha Beta	Alpha-Beta Barrel	Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A	Regulatory factor, effector binding domain	4a1mA01

1D5YA 3B49A 3Q5RA 5KATA 1JYHA 3E0HA 3LURA 5KAXA 5GQQA 5KAVA 5KCBA 3IAOA 4A1MA 5KAUA 5KAWA 1R8EA 3Q5PA 3D6ZA 1EXJA 2GOVA 3Q5SA 3R8KA 3D6YA 2BOWA 3Q1MA 3Q2YA 3R8JA 2HVAA 4AYZA 4AYZB 3GK6A 4B0YA 2KCUA 1EXIA 1BOWA 3D70A 3Q3DA 3D71A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1D5Y A;  3B49 A;  3Q5R A;  5KAT A;  1JYH A;  3E0H A;  3LUR A;  5KAX A;  5GQQ A;  5KAV A;  5KCB A;  3IAO A;  4A1M A;  5KAU A;  5KAW A;  1R8E A;  3Q5P A;  3D6Z A;  1EXJ A;  2GOV A;  3Q5S A;  3R8K A;  3D6Y A;  2BOW A;  3Q1M A;  3Q2Y A;  3R8J A;  2HVA A;  4AYZ A;  4AYZ B;  3GK6 A;  4B0Y A;  2KCU A;  1EXI A;  1BOW A;  3D70 A;  3Q3D A;  3D71 A; 
#chains in the Genus database with same CATH topology
 1D5Y A;  3B49 A;  3Q5R A;  5KAT A;  1JYH A;  3E0H A;  3LUR A;  5KAX A;  5GQQ A;  5KAV A;  5KCB A;  3IAO A;  4A1M A;  5KAU A;  5KAW A;  1R8E A;  3Q5P A;  3D6Z A;  1EXJ A;  2GOV A;  3Q5S A;  3R8K A;  3D6Y A;  2BOW A;  3Q1M A;  3Q2Y A;  3R8J A;  2HVA A;  4AYZ A;  4AYZ B;  3GK6 A;  4B0Y A;  2KCU A;  1EXI A;  1BOW A;  3D70 A;  3Q3D A;  3D71 A; 
#chains in the Genus database with same CATH homology
 1D5Y A;  3B49 A;  3Q5R A;  5KAT A;  1JYH A;  3E0H A;  3LUR A;  5KAX A;  5GQQ A;  5KAV A;  5KCB A;  3IAO A;  4A1M A;  5KAU A;  5KAW A;  1R8E A;  3Q5P A;  3D6Z A;  1EXJ A;  2GOV A;  3Q5S A;  3R8K A;  3D6Y A;  2BOW A;  3Q1M A;  3Q2Y A;  3R8J A;  2HVA A;  4AYZ A;  4AYZ B;  3GK6 A;  4B0Y A;  2KCU A;  1EXI A;  1BOW A;  3D70 A;  3Q3D A;  3D71 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4A1MA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations