4DWZA

Crystal structure of ton_0340
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
258
structure length
258
Chain Sequence
b'NRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein TON_0340
publication title Experimental phasing using zinc anomalous scattering
pubmed doi rcsb
source organism Thermococcus onnurineus
molecule tags Metal binding protein
total genus 88
structure length 258
sequence length 258
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14336 DUF4392 Domain of unknown function (DUF4392)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4dwzA00
5GL2A 4DWZA 5GL4A 4FC5A 5GKXA 5GL3A
chains in the Genus database with same CATH superfamily
2QB7A 2ZXPA 3DEVA 1WPPA 4PY9A 5GL3A 4DWZA 2ZXOA 2HAWA 2QB8A 1WPMA 4RPAA 3W5WA 2IW4A 2QB6A 5GKXA 4FC5A 1WPNA 1IR6A 4LS9A 2ENXA 1K23A 2EB0A 2ZXRA 5GL2A 1I74A 1K20A 5GL4A
chains in the Genus database with same CATH topology
2QB7A 2ZXPA 3DEVA 1WPPA 4PY9A 5GL3A 4DWZA 2ZXOA 2HAWA 2QB8A 1WPMA 4RPAA 3W5WA 2IW4A 2QB6A 5GKXA 4FC5A 1WPNA 1IR6A 4LS9A 2ENXA 1K23A 2EB0A 2ZXRA 5GL2A 1I74A 1K20A 5GL4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GL2 A;  4DWZ A;  5GL4 A;  4FC5 A;  5GKX A;  5GL3 A; 
#chains in the Genus database with same CATH topology
 2QB7 A;  2ZXP A;  3DEV A;  1WPP A;  4PY9 A;  5GL3 A;  4DWZ A;  2ZXO A;  2HAW A;  2QB8 A;  1WPM A;  4RPA A;  3W5W A;  2IW4 A;  2QB6 A;  5GKX A;  4FC5 A;  1WPN A;  1IR6 A;  4LS9 A;  2ENX A;  1K23 A;  2EB0 A;  2ZXR A;  5GL2 A;  1I74 A;  1K20 A;  5GL4 A; 
#chains in the Genus database with same CATH homology
 2QB7 A;  2ZXP A;  3DEV A;  1WPP A;  4PY9 A;  5GL3 A;  4DWZ A;  2ZXO A;  2HAW A;  2QB8 A;  1WPM A;  4RPA A;  3W5W A;  2IW4 A;  2QB6 A;  5GKX A;  4FC5 A;  1WPN A;  1IR6 A;  4LS9 A;  2ENX A;  1K23 A;  2EB0 A;  2ZXR A;  5GL2 A;  1I74 A;  1K20 A;  5GL4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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