4DWZA

Crystal structure of ton_0340
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
258
structure length
258
Chain Sequence
NRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Experimental phasing using zinc anomalous scattering
pubmed doi rcsb
source organism Thermococcus onnurineus
molecule tags Metal binding protein
molecule keywords Hypothetical protein TON_0340
total genus 88
structure length 258
sequence length 258
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14336 DUF4392 Domain of unknown function (DUF4392)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4dwzA00
4FC5A 5GL2A 5GL3A 5GL4A 4DWZA 5GKXA
chains in the Genus database with same CATH superfamily
1K23A 1I74A 3DEVA 2ENXA 2QB6A 4RPAA 5GKXA 4FC5A 1IR6A 1K20A 2EB0A 2HAWA 2ZXOA 2QB7A 5GL4A 4PY9A 2ZXRA 2IW4A 2QB8A 1WPMA 4LS9A 1WPPA 5GL2A 3W5WA 5GL3A 2ZXPA 1WPNA 4DWZA
chains in the Genus database with same CATH topology
1K23A 1I74A 3DEVA 2ENXA 2QB6A 4RPAA 5GKXA 4FC5A 1IR6A 1K20A 2EB0A 2HAWA 2ZXOA 2QB7A 5GL4A 4PY9A 2ZXRA 2IW4A 2QB8A 1WPMA 4LS9A 1WPPA 5GL2A 3W5WA 5GL3A 2ZXPA 1WPNA 4DWZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FC5 A;  5GL2 A;  5GL3 A;  5GL4 A;  4DWZ A;  5GKX A; 
#chains in the Genus database with same CATH topology
 1K23 A;  1I74 A;  3DEV A;  2ENX A;  2QB6 A;  4RPA A;  5GKX A;  4FC5 A;  1IR6 A;  1K20 A;  2EB0 A;  2HAW A;  2ZXO A;  2QB7 A;  5GL4 A;  4PY9 A;  2ZXR A;  2IW4 A;  2QB8 A;  1WPM A;  4LS9 A;  1WPP A;  5GL2 A;  3W5W A;  5GL3 A;  2ZXP A;  1WPN A;  4DWZ A; 
#chains in the Genus database with same CATH homology
 1K23 A;  1I74 A;  3DEV A;  2ENX A;  2QB6 A;  4RPA A;  5GKX A;  4FC5 A;  1IR6 A;  1K20 A;  2EB0 A;  2HAW A;  2ZXO A;  2QB7 A;  5GL4 A;  4PY9 A;  2ZXR A;  2IW4 A;  2QB8 A;  1WPM A;  4LS9 A;  1WPP A;  5GL2 A;  3W5W A;  5GL3 A;  2ZXP A;  1WPN A;  4DWZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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