2EB0A

Crystal structure of methanococcus jannaschii putative family ii inorganic pyrophosphatase
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
307
structure length
304
Chain Sequence
MRYVVGHKNPDTDSIASAIVLAYFLDCYPARLGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPEEIINMDFKNFDFNGKKVGIGQVEVIDVSEVESKKEDIYKLLEEKLKNEGYDLIVFLITDIMKEGSEALVVGNKEMFEKAFVEGNSVFLEGVMSRKKQVVPPLERAYNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
rcsb
source organism Methanocaldococcus jannaschii
molecule tags Hydrolase
molecule keywords Manganese-dependent inorganic pyrophosphatase
total genus 104
structure length 304
sequence length 307
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2007-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2eb0A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 2eb0A01
1K20A 1WPMA 1WPPA 2IW4A 2QB8A 4LS9A 1I74A 2HAWA 2ENXA 3W5WA 3DEVA 2QB6A 4RPAA 2QB7A 4PY9A 1K23A 2EB0A 1WPNA
chains in the Genus database with same CATH superfamily
2HAWA 4LS9A 4GL6A 4LG3A 3G98A 4JUUA 3EKMA 2QB6A 1IR6A 1WPMA 1T6KA 2AZPA 1GQZA 1SDJA 1K23A 1U1WA 5GKXA 2PW0A 2ZXOA 3PW9A 5GL4A 2GKJA 4K7GB 3WQZA 3DEVA 3EJXA 4J9XA 4FC5A 5ANPA 4DUNA 2PVZA 4IK0A 5M47A 4Q60A 4LB0A 5GL3A 2LT2A 2ZXRA 1U1XA 5HA4A 2GKEA 1WPNA 1TM0A 4OA3A 4JD7A 1W62A 4PY9A 1U1VA 1W61A 2YMAA 2KW7A 2ZVFA 5IWEA 5H2GA 1QY9A 2ZXPA 1I74A 2ENXA 5H2YA 1WPPA 3IGHX 2EB0A 2KPTA 4J9WA 3G7KA 1XUBA 4Q2HA 2Q9HA 2QB7A 3PTJA 2QB8A 2Q9JA 1K20A 4K8LA 4DWZA 4JBDA 2MPBA 3PVHA 1S7JA 4K7XA 1YM5A 2H9FA 5GL2A 3W5WA 1QYAA 3EDNA 3FVEA 4IJZA 2IW4A 3ICJA 2OTNA 4JCIA 1BWZA 1XUAA 1U0KA 4RPAA
chains in the Genus database with same CATH topology
2HAWA 4LS9A 4GL6A 4LG3A 3G98A 4JUUA 3EKMA 2QB6A 1IR6A 1WPMA 1T6KA 2AZPA 1GQZA 1SDJA 1K23A 1U1WA 5GKXA 2PW0A 2ZXOA 3PW9A 5GL4A 2GKJA 4K7GB 3WQZA 3DEVA 3EJXA 4J9XA 4FC5A 5ANPA 4DUNA 2PVZA 4IK0A 5M47A 4Q60A 4LB0A 5GL3A 2LT2A 2ZXRA 1U1XA 5HA4A 2GKEA 1WPNA 1TM0A 4OA3A 4JD7A 1W62A 4PY9A 1U1VA 1W61A 2YMAA 2KW7A 2ZVFA 5IWEA 5H2GA 1QY9A 2ZXPA 1I74A 2ENXA 5H2YA 1WPPA 3IGHX 2EB0A 2KPTA 4J9WA 3G7KA 1XUBA 4Q2HA 2Q9HA 2QB7A 3PTJA 2QB8A 2Q9JA 1K20A 4K8LA 4DWZA 4JBDA 2MPBA 3PVHA 1S7JA 4K7XA 1YM5A 2H9FA 5GL2A 3W5WA 1QYAA 3EDNA 3FVEA 4IJZA 2IW4A 3ICJA 2OTNA 4JCIA 1BWZA 1XUAA 1U0KA 4RPAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K20 A;  1WPM A;  1WPP A;  2IW4 A;  2QB8 A;  4LS9 A;  1I74 A;  2HAW A;  2ENX A;  3W5W A;  3DEV A;  2QB6 A;  4RPA A;  2QB7 A;  4PY9 A;  1K23 A;  2EB0 A;  1WPN A; 
#chains in the Genus database with same CATH topology
 2HAW A;  4LS9 A;  4GL6 A;  4LG3 A;  3G98 A;  4JUU A;  3EKM A;  2QB6 A;  1IR6 A;  1WPM A;  1T6K A;  2AZP A;  1GQZ A;  1SDJ A;  1K23 A;  1U1W A;  5GKX A;  2PW0 A;  2ZXO A;  3PW9 A;  5GL4 A;  2GKJ A;  4K7G B;  3WQZ A;  3DEV A;  3EJX A;  4J9X A;  4FC5 A;  5ANP A;  4DUN A;  2PVZ A;  4IK0 A;  5M47 A;  4Q60 A;  4LB0 A;  5GL3 A;  2LT2 A;  2ZXR A;  1U1X A;  5HA4 A;  2GKE A;  1WPN A;  1TM0 A;  4OA3 A;  4JD7 A;  1W62 A;  4PY9 A;  1U1V A;  1W61 A;  2YMA A;  2KW7 A;  2ZVF A;  5IWE A;  5H2G A;  1QY9 A;  2ZXP A;  1I74 A;  2ENX A;  5H2Y A;  1WPP A;  3IGH X;  2EB0 A;  2KPT A;  4J9W A;  3G7K A;  1XUB A;  4Q2H A;  2Q9H A;  2QB7 A;  3PTJ A;  2QB8 A;  2Q9J A;  1K20 A;  4K8L A;  4DWZ A;  4JBD A;  2MPB A;  3PVH A;  1S7J A;  4K7X A;  1YM5 A;  2H9F A;  5GL2 A;  3W5W A;  1QYA A;  3EDN A;  3FVE A;  4IJZ A;  2IW4 A;  3ICJ A;  2OTN A;  4JCI A;  1BWZ A;  1XUA A;  1U0K A;  4RPA A; 
#chains in the Genus database with same CATH homology
 2HAW A;  4LS9 A;  4GL6 A;  4LG3 A;  3G98 A;  4JUU A;  3EKM A;  2QB6 A;  1IR6 A;  1WPM A;  1T6K A;  2AZP A;  1GQZ A;  1SDJ A;  1K23 A;  1U1W A;  5GKX A;  2PW0 A;  2ZXO A;  3PW9 A;  5GL4 A;  2GKJ A;  4K7G B;  3WQZ A;  3DEV A;  3EJX A;  4J9X A;  4FC5 A;  5ANP A;  4DUN A;  2PVZ A;  4IK0 A;  5M47 A;  4Q60 A;  4LB0 A;  5GL3 A;  2LT2 A;  2ZXR A;  1U1X A;  5HA4 A;  2GKE A;  1WPN A;  1TM0 A;  4OA3 A;  4JD7 A;  1W62 A;  4PY9 A;  1U1V A;  1W61 A;  2YMA A;  2KW7 A;  2ZVF A;  5IWE A;  5H2G A;  1QY9 A;  2ZXP A;  1I74 A;  2ENX A;  5H2Y A;  1WPP A;  3IGH X;  2EB0 A;  2KPT A;  4J9W A;  3G7K A;  1XUB A;  4Q2H A;  2Q9H A;  2QB7 A;  3PTJ A;  2QB8 A;  2Q9J A;  1K20 A;  4K8L A;  4DWZ A;  4JBD A;  2MPB A;  3PVH A;  1S7J A;  4K7X A;  1YM5 A;  2H9F A;  5GL2 A;  3W5W A;  1QYA A;  3EDN A;  3FVE A;  4IJZ A;  2IW4 A;  3ICJ A;  2OTN A;  4JCI A;  1BWZ A;  1XUA A;  1U0K A;  4RPA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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