2EB0A

Crystal structure of methanococcus jannaschii putative family ii inorganic pyrophosphatase
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
307
structure length
304
Chain Sequence
MRYVVGHKNPDTDSIASAIVLAYFLDCYPARLGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPEEIINMDFKNFDFNGKKVGIGQVEVIDVSEVESKKEDIYKLLEEKLKNEGYDLIVFLITDIMKEGSEALVVGNKEMFEKAFVEGNSVFLEGVMSRKKQVVPPLERAYNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
rcsb
source organism Methanocaldococcus jannaschii
molecule tags Hydrolase
molecule keywords Manganese-dependent inorganic pyrophosphatase
total genus 104
structure length 304
sequence length 307
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2007-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2eb0A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 2eb0A01
2HAWA 1WPMA 2EB0A 2QB7A 1WPNA 1WPPA 4RPAA 4LS9A 2IW4A 1K23A 3W5WA 3DEVA 1K20A 1I74A 2QB6A 2QB8A 4PY9A 2ENXA
chains in the Genus database with same CATH superfamily
5GL4A 2KPTA 4DUNA 1TM0A 4LS9A 2IW4A 1IR6A 3DEVA 4LB0A 4JD7A 4FC5A 4J9XA 1GQZA 2PVZA 3EJXA 5IWEA 4J9WA 2ENXA 1YM5A 4IK0A 2PW0A 3PTJA 1XUAA 1U1VA 2Q9HA 1K20A 2AZPA 5H2YA 4PY9A 5GL3A 4OA3A 1WPMA 1WPNA 2GKEA 5GL2A 4K7XA 1W61A 1QY9A 1WPPA 1QYAA 1K23A 4Q60A 1BWZA 2ZVFA 4JCIA 2KW7A 2OTNA 3W5WA 3EKMA 3PW9A 1T6KA 3FVEA 4JUUA 2EB0A 5M47A 4DWZA 3ICJA 4RPAA 4Q2HA 1XUBA 3IGHX 4K7GB 4K8LA 2ZXPA 2YMAA 1W62A 2QB6A 3G7KA 4GL6A 2MPBA 2QB8A 2ZXOA 1S7JA 2H9FA 3WQZA 2QB7A 5H2GA 1I74A 2LT2A 5GKXA 4LG3A 2Q9JA 2ZXRA 1U1WA 5ANPA 5HA4A 1U1XA 1U0KA 3EDNA 1SDJA 3PVHA 4JBDA 4IJZA 2HAWA 2GKJA 3G98A
chains in the Genus database with same CATH topology
5GL4A 2KPTA 4DUNA 1TM0A 4LS9A 2IW4A 1IR6A 3DEVA 4LB0A 4JD7A 4FC5A 4J9XA 1GQZA 2PVZA 3EJXA 5IWEA 4J9WA 2ENXA 1YM5A 4IK0A 2PW0A 3PTJA 1XUAA 1U1VA 2Q9HA 1K20A 2AZPA 5H2YA 4PY9A 5GL3A 4OA3A 1WPMA 1WPNA 2GKEA 5GL2A 4K7XA 1W61A 1QY9A 1WPPA 1QYAA 1K23A 4Q60A 1BWZA 2ZVFA 4JCIA 2KW7A 2OTNA 3W5WA 3EKMA 3PW9A 1T6KA 3FVEA 4JUUA 2EB0A 5M47A 4DWZA 3ICJA 4RPAA 4Q2HA 1XUBA 3IGHX 4K7GB 4K8LA 2ZXPA 2YMAA 1W62A 2QB6A 3G7KA 4GL6A 2MPBA 2QB8A 2ZXOA 1S7JA 2H9FA 3WQZA 2QB7A 5H2GA 1I74A 2LT2A 5GKXA 4LG3A 2Q9JA 2ZXRA 1U1WA 5ANPA 5HA4A 1U1XA 1U0KA 3EDNA 1SDJA 3PVHA 4JBDA 4IJZA 2HAWA 2GKJA 3G98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HAW A;  1WPM A;  2EB0 A;  2QB7 A;  1WPN A;  1WPP A;  4RPA A;  4LS9 A;  2IW4 A;  1K23 A;  3W5W A;  3DEV A;  1K20 A;  1I74 A;  2QB6 A;  2QB8 A;  4PY9 A;  2ENX A; 
#chains in the Genus database with same CATH topology
 5GL4 A;  2KPT A;  4DUN A;  1TM0 A;  4LS9 A;  2IW4 A;  1IR6 A;  3DEV A;  4LB0 A;  4JD7 A;  4FC5 A;  4J9X A;  1GQZ A;  2PVZ A;  3EJX A;  5IWE A;  4J9W A;  2ENX A;  1YM5 A;  4IK0 A;  2PW0 A;  3PTJ A;  1XUA A;  1U1V A;  2Q9H A;  1K20 A;  2AZP A;  5H2Y A;  4PY9 A;  5GL3 A;  4OA3 A;  1WPM A;  1WPN A;  2GKE A;  5GL2 A;  4K7X A;  1W61 A;  1QY9 A;  1WPP A;  1QYA A;  1K23 A;  4Q60 A;  1BWZ A;  2ZVF A;  4JCI A;  2KW7 A;  2OTN A;  3W5W A;  3EKM A;  3PW9 A;  1T6K A;  3FVE A;  4JUU A;  2EB0 A;  5M47 A;  4DWZ A;  3ICJ A;  4RPA A;  4Q2H A;  1XUB A;  3IGH X;  4K7G B;  4K8L A;  2ZXP A;  2YMA A;  1W62 A;  2QB6 A;  3G7K A;  4GL6 A;  2MPB A;  2QB8 A;  2ZXO A;  1S7J A;  2H9F A;  3WQZ A;  2QB7 A;  5H2G A;  1I74 A;  2LT2 A;  5GKX A;  4LG3 A;  2Q9J A;  2ZXR A;  1U1W A;  5ANP A;  5HA4 A;  1U1X A;  1U0K A;  3EDN A;  1SDJ A;  3PVH A;  4JBD A;  4IJZ A;  2HAW A;  2GKJ A;  3G98 A; 
#chains in the Genus database with same CATH homology
 5GL4 A;  2KPT A;  4DUN A;  1TM0 A;  4LS9 A;  2IW4 A;  1IR6 A;  3DEV A;  4LB0 A;  4JD7 A;  4FC5 A;  4J9X A;  1GQZ A;  2PVZ A;  3EJX A;  5IWE A;  4J9W A;  2ENX A;  1YM5 A;  4IK0 A;  2PW0 A;  3PTJ A;  1XUA A;  1U1V A;  2Q9H A;  1K20 A;  2AZP A;  5H2Y A;  4PY9 A;  5GL3 A;  4OA3 A;  1WPM A;  1WPN A;  2GKE A;  5GL2 A;  4K7X A;  1W61 A;  1QY9 A;  1WPP A;  1QYA A;  1K23 A;  4Q60 A;  1BWZ A;  2ZVF A;  4JCI A;  2KW7 A;  2OTN A;  3W5W A;  3EKM A;  3PW9 A;  1T6K A;  3FVE A;  4JUU A;  2EB0 A;  5M47 A;  4DWZ A;  3ICJ A;  4RPA A;  4Q2H A;  1XUB A;  3IGH X;  4K7G B;  4K8L A;  2ZXP A;  2YMA A;  1W62 A;  2QB6 A;  3G7K A;  4GL6 A;  2MPB A;  2QB8 A;  2ZXO A;  1S7J A;  2H9F A;  3WQZ A;  2QB7 A;  5H2G A;  1I74 A;  2LT2 A;  5GKX A;  4LG3 A;  2Q9J A;  2ZXR A;  1U1W A;  5ANP A;  5HA4 A;  1U1X A;  1U0K A;  3EDN A;  1SDJ A;  3PVH A;  4JBD A;  4IJZ A;  2HAW A;  2GKJ A;  3G98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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