2EB0A

Crystal structure of methanococcus jannaschii putative family ii inorganic pyrophosphatase
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
307
structure length
304
Chain Sequence
b'MRYVVGHKNPDTDSIASAIVLAYFLDCYPARLGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPEEIINMDFKNFDFNGKKVGIGQVEVIDVSEVESKKEDIYKLLEEKLKNEGYDLIVFLITDIMKEGSEALVVGNKEMFEKAFVEGNSVFLEGVMSRKKQVVPPLERAYNG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Manganese-dependent inorganic pyrophosphatase
publication title Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
rcsb
source organism Methanocaldococcus jannaschii
molecule tags Hydrolase
total genus 104
structure length 304
sequence length 307
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2007-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2eb0A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 2eb0A01
1K23A 3DEVA 3W5WA 1I74A 2EB0A 2QB8A 4PY9A 1K20A 4RPAA 1WPMA 1WPPA 2ENXA 2QB6A 2QB7A 1WPNA 2IW4A 2HAWA 4LS9A
chains in the Genus database with same CATH superfamily
5GKXA 2ZXPA 1GQZA 1IR6A 4K7GB 4OA3A 1WPPA 2QB6A 4DUNA 3FVEA 3EJXA 1WPNA 4Q60A 4JUUA 5H2GA 2GKJA 1YM5A 4LB0A 4K7XA 4JBDA 5H2YA 2OTNA 3IGHX 1U1VA 1QYAA 3PVHA 1U1WA 1U1XA 4LS9A 4J9XA 1K23A 2MPBA 3EDNA 1K20A 5GL3A 1T6KA 2AZPA 4Q2HA 1W61A 2QB7A 5M47A 2YMAA 1S7JA 2Q9HA 2IW4A 4DWZA 1BWZA 4RPAA 4JCIA 2GKEA 2ZVFA 2PW0A 4J9WA 4FC5A 4IJZA 5IWEA 3EKMA 5GL4A 2QB8A 1XUAA 1SDJA 3W5WA 4IK0A 1I74A 2EB0A 4PY9A 4JD7A 2ZXRA 3G7KA 1TM0A 5HA4A 3ICJA 2Q9JA 2ENXA 5GL2A 3WQZA 2LT2A 3PW9A 4GL6A 1XUBA 3DEVA 2HAWA 3G98A 2ZXOA 4K8LA 2KW7A 2H9FA 1W62A 1U0KA 2PVZA 3PTJA 2KPTA 5ANPA 1WPMA 4LG3A 1QY9A
chains in the Genus database with same CATH topology
5GKXA 2ZXPA 1GQZA 1IR6A 4K7GB 4OA3A 1WPPA 2QB6A 4DUNA 3FVEA 3EJXA 1WPNA 4Q60A 4JUUA 5H2GA 2GKJA 1YM5A 4LB0A 4K7XA 4JBDA 5H2YA 2OTNA 3IGHX 1U1VA 1QYAA 3PVHA 1U1WA 1U1XA 4LS9A 4J9XA 1K23A 2MPBA 3EDNA 1K20A 5GL3A 1T6KA 2AZPA 4Q2HA 1W61A 2QB7A 5M47A 2YMAA 1S7JA 2Q9HA 2IW4A 4DWZA 1BWZA 4RPAA 4JCIA 2GKEA 2ZVFA 2PW0A 4J9WA 4FC5A 4IJZA 5IWEA 3EKMA 5GL4A 2QB8A 1XUAA 1SDJA 3W5WA 4IK0A 1I74A 2EB0A 4PY9A 4JD7A 2ZXRA 3G7KA 1TM0A 5HA4A 3ICJA 2Q9JA 2ENXA 5GL2A 3WQZA 2LT2A 3PW9A 4GL6A 1XUBA 3DEVA 2HAWA 3G98A 2ZXOA 4K8LA 2KW7A 2H9FA 1W62A 1U0KA 2PVZA 3PTJA 2KPTA 5ANPA 1WPMA 4LG3A 1QY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K23 A;  3DEV A;  3W5W A;  1I74 A;  2EB0 A;  2QB8 A;  4PY9 A;  1K20 A;  4RPA A;  1WPM A;  1WPP A;  2ENX A;  2QB6 A;  2QB7 A;  1WPN A;  2IW4 A;  2HAW A;  4LS9 A; 
#chains in the Genus database with same CATH topology
 5GKX A;  2ZXP A;  1GQZ A;  1IR6 A;  4K7G B;  4OA3 A;  1WPP A;  2QB6 A;  4DUN A;  3FVE A;  3EJX A;  1WPN A;  4Q60 A;  4JUU A;  5H2G A;  2GKJ A;  1YM5 A;  4LB0 A;  4K7X A;  4JBD A;  5H2Y A;  2OTN A;  3IGH X;  1U1V A;  1QYA A;  3PVH A;  1U1W A;  1U1X A;  4LS9 A;  4J9X A;  1K23 A;  2MPB A;  3EDN A;  1K20 A;  5GL3 A;  1T6K A;  2AZP A;  4Q2H A;  1W61 A;  2QB7 A;  5M47 A;  2YMA A;  1S7J A;  2Q9H A;  2IW4 A;  4DWZ A;  1BWZ A;  4RPA A;  4JCI A;  2GKE A;  2ZVF A;  2PW0 A;  4J9W A;  4FC5 A;  4IJZ A;  5IWE A;  3EKM A;  5GL4 A;  2QB8 A;  1XUA A;  1SDJ A;  3W5W A;  4IK0 A;  1I74 A;  2EB0 A;  4PY9 A;  4JD7 A;  2ZXR A;  3G7K A;  1TM0 A;  5HA4 A;  3ICJ A;  2Q9J A;  2ENX A;  5GL2 A;  3WQZ A;  2LT2 A;  3PW9 A;  4GL6 A;  1XUB A;  3DEV A;  2HAW A;  3G98 A;  2ZXO A;  4K8L A;  2KW7 A;  2H9F A;  1W62 A;  1U0K A;  2PVZ A;  3PTJ A;  2KPT A;  5ANP A;  1WPM A;  4LG3 A;  1QY9 A; 
#chains in the Genus database with same CATH homology
 5GKX A;  2ZXP A;  1GQZ A;  1IR6 A;  4K7G B;  4OA3 A;  1WPP A;  2QB6 A;  4DUN A;  3FVE A;  3EJX A;  1WPN A;  4Q60 A;  4JUU A;  5H2G A;  2GKJ A;  1YM5 A;  4LB0 A;  4K7X A;  4JBD A;  5H2Y A;  2OTN A;  3IGH X;  1U1V A;  1QYA A;  3PVH A;  1U1W A;  1U1X A;  4LS9 A;  4J9X A;  1K23 A;  2MPB A;  3EDN A;  1K20 A;  5GL3 A;  1T6K A;  2AZP A;  4Q2H A;  1W61 A;  2QB7 A;  5M47 A;  2YMA A;  1S7J A;  2Q9H A;  2IW4 A;  4DWZ A;  1BWZ A;  4RPA A;  4JCI A;  2GKE A;  2ZVF A;  2PW0 A;  4J9W A;  4FC5 A;  4IJZ A;  5IWE A;  3EKM A;  5GL4 A;  2QB8 A;  1XUA A;  1SDJ A;  3W5W A;  4IK0 A;  1I74 A;  2EB0 A;  4PY9 A;  4JD7 A;  2ZXR A;  3G7K A;  1TM0 A;  5HA4 A;  3ICJ A;  2Q9J A;  2ENX A;  5GL2 A;  3WQZ A;  2LT2 A;  3PW9 A;  4GL6 A;  1XUB A;  3DEV A;  2HAW A;  3G98 A;  2ZXO A;  4K8L A;  2KW7 A;  2H9F A;  1W62 A;  1U0K A;  2PVZ A;  3PTJ A;  2KPT A;  5ANP A;  1WPM A;  4LG3 A;  1QY9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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