5GKXA

Crystal structure of ton_0340, apo form
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
259
structure length
259
Chain Sequence
NRGVLKVYLDYRRKNFNFLHNSTKMFLDNLERVLIVTGFPIPPMMVAETDGPPGALAIYRAVEMLGGKAEILTYSEVEKALEPFGVSLARTPEPEDYSLIISVETPGRAADGRYYSMSALEIKRDPLDGIFLKARALGIPTIGVGDGGNEIGMGKIRELVVGHVPHGEKIASVVETDELIVSAVSNWGAYGLVAQASIEVGRNLLEGWDERRVIEAISSAGLIDGVSKTLAPSVDGIRLMVHEGIVELLKAVVDEAIKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uncharacterized protein
publication title Identification of a Highly Conserved Hypothetical Protein TON_0340 as a Probable Manganese-Dependent Phosphatase.
pubmed doi rcsb
source organism Thermococcus onnurineus (strain na1)
molecule tags Unknown function
total genus 87
structure length 259
sequence length 259
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1640.20 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 5gkxA00
4DWZA 5GL3A 5GL4A 5GKXA 5GL2A 4FC5A
chains in the Genus database with same CATH superfamily
1WPMA 5GL4A 5GL2A 1K20A 1WPNA 1K23A 4DWZA 4LS9A 2QB6A 1WPPA 4RPAA 2ENXA 4PY9A 2HAWA 3W5WA 2IW4A 2EB0A 4FC5A 2ZXRA 2QB8A 1I74A 2ZXOA 2QB7A 5GL3A 2ZXPA 5GKXA 3DEVA 1IR6A
chains in the Genus database with same CATH topology
1WPMA 5GL4A 5GL2A 1K20A 1WPNA 1K23A 4DWZA 4LS9A 2QB6A 1WPPA 4RPAA 2ENXA 4PY9A 2HAWA 3W5WA 2IW4A 2EB0A 4FC5A 2ZXRA 2QB8A 1I74A 2ZXOA 2QB7A 5GL3A 2ZXPA 5GKXA 3DEVA 1IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DWZ A;  5GL3 A;  5GL4 A;  5GKX A;  5GL2 A;  4FC5 A; 
#chains in the Genus database with same CATH topology
 1WPM A;  5GL4 A;  5GL2 A;  1K20 A;  1WPN A;  1K23 A;  4DWZ A;  4LS9 A;  2QB6 A;  1WPP A;  4RPA A;  2ENX A;  4PY9 A;  2HAW A;  3W5W A;  2IW4 A;  2EB0 A;  4FC5 A;  2ZXR A;  2QB8 A;  1I74 A;  2ZXO A;  2QB7 A;  5GL3 A;  2ZXP A;  5GKX A;  3DEV A;  1IR6 A; 
#chains in the Genus database with same CATH homology
 1WPM A;  5GL4 A;  5GL2 A;  1K20 A;  1WPN A;  1K23 A;  4DWZ A;  4LS9 A;  2QB6 A;  1WPP A;  4RPA A;  2ENX A;  4PY9 A;  2HAW A;  3W5W A;  2IW4 A;  2EB0 A;  4FC5 A;  2ZXR A;  2QB8 A;  1I74 A;  2ZXO A;  2QB7 A;  5GL3 A;  2ZXP A;  5GKX A;  3DEV A;  1IR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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