4E37A

Crystal structure of p. aeruginosa catalase, kata tetramer
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
479
structure length
478
Chain Sequence
EKTRLTTAAGAPVVDNQNVQTAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSAAYGTFTVTHDITPYTRAKIFSQVGKKTDMFLRFSTVAGERGAADAERDIRGFSMRFYTEQGNWDLVGNNTPVFYLRDPLKFPDLNHVVKRDPRTNLRNATFKWDFFSHLPESLHQLTIDFSDRGLPKSYRHIHGFGSHTFSFINANNERFWVKFHFKTQQGIENLTNAEAAEVIAQDRESSQRDLYESIEKGDFPRWKMYVQIMPEKEAATYRYNPFDLTKVWPHGDYPLIEVGFFELNRNPDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAARCPHQVYHRDGGMRVDGNNAHQRVTYEPNSFNQWQEQPDFSEPPLSLEGAADHWNHRVDDDYYSQPAALFHLFTDEQKQRLFANIAEDIRDVPEQIQRRQIGLFLKVDPAYGKGVADALGLKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas aeruginosa
publication title KatA, the Major Catalase in Pseudomonas aeruginosa, Assists in Protecting Anaerobic Bacteria From Metabolic and Exogenous Nitric Oxide
rcsb
molecule keywords Catalase
total genus 149
structure length 478
sequence length 479
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2012-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4e37A00
3PQ7A 1GGKA 1CF9A 5BV2P 2CAHA 4BFLA 1GG9A 1GGHA 3PQ8A 3EJ6A 1GWFA 1P81A 1H6NA 3PQ3A 4CABA 3P9PA 1GGEA 4ENQA 4BIMA 4ENRA 4AUNA 3PQ5A 3TTWA 2IQFA 4B31A 3P9QA 2XF2A 4AUMA 3DY5A 2IUFA 4ENWA 4AUEA 3TTUA 4QONA 4B5KA 4E37A 4AJ9A 1U5UA 3ZJ4A 4B7AA 1MQFA 3TTVA 3P9RA 1SI8A 1QWMA 2CAGA 3P9SA 4ENUA 2XQ1A 4QOPA 1E93A 1QWLA 4ENVA 1NM0A 2A9EA 1QWSA 3TTTA 1P7ZA 1P80A 1GWHA 3VU3A 1F4JA 1HBZA 1P7YA 4ENPA 4ENSA 3PQ6A 1GGFA 4QOQA 1A4EA 4ENTA 1GGJA 4QOLA 4B40A 4B2YA 1QF7A 1SY7A 3HB6A 3ZJ5A 4QOMA 1M7SA 1M85A 4QOOA 2J2MA 2ISAA 4QORA 3TTXA 1GWEA 1IPHA 4AULA 3PQ4A 3PQ2A 1H7KA
chains in the Genus database with same CATH superfamily
3PQ7A 1GGKA 4BLCA 1CF9A 5BV2P 3NWLA 2CAHA 4BFLA 8CATA 1GG9A 1TH3A 1GGHA 3PQ8A 3EJ6A 1GWFA 1P81A 1H6NA 3PQ3A 4CABA 3P9PA 1GGEA 4ENQA 4BIMA 4ENRA 4AUNA 3PQ5A 3TTWA 1QQWA 2IQFA 4B31A 3P9QA 2XF2A 4AUMA 3E4WA 3DY5A 2IUFA 4ENWA 3E4YA 4AUEA 3TTUA 1DGGA 5GKNA 4QONA 4B5KA 4E37A 4AJ9A 1U5UA 1DGHA 3ZJ4A 1DGFA 1TH4A 4B7AA 1MQFA 3TTVA 4B7GA 3P9RA 7CATA 1TGUA 1SI8A 1QWMA 2CAGA 3P9SA 4ENUA 2XQ1A 4QOPA 1E93A 1QWLA 3RE8A 4ENVA 1NM0A 2A9EA 1QWSA 3TTTA 1P7ZA 1P80A 1GWHA 1DGHB 3RGPA 3VU3A 1F4JA 1HBZA 1P7YA 4ENPA 4ENSA 3PQ6A 1GGFA 4QOQA 1A4EA 4ENTA 4B7FA 1GGJA 1TH2A 4QOLA 4B40A 4B2YA 1QF7A 1SY7A 3HB6A 3ZJ5A 4QOMA 1M7SA 3J7BA 1M85A 4QOOA 3RGSA 2J2MA 2ISAA 4QORA 3TTXA 1GWEA 1IPHA 3PQ4A 4AULA 3PQ2A 1DGBA 1H7KA 4B7HA
chains in the Genus database with same CATH topology
3PQ7A 1GGKA 1CF9A 5BV2P 2CAHA 4BFLA 1GG9A 1GGHA 3PQ8A 3EJ6A 1GWFA 1P81A 1H6NA 3PQ3A 4CABA 3P9PA 1GGEA 4ENQA 4BIMA 4ENRA 4AUNA 3PQ5A 3TTWA 2IQFA 4B31A 3P9QA 2XF2A 4AUMA 3DY5A 2IUFA 4ENWA 4AUEA 3TTUA 4QONA 4B5KA 4E37A 4AJ9A 1U5UA 3ZJ4A 4B7AA 1MQFA 3TTVA 3P9RA 1SI8A 1QWMA 2CAGA 3P9SA 4ENUA 2XQ1A 4QOPA 1E93A 1QWLA 4ENVA 1NM0A 2A9EA 1QWSA 3TTTA 1P7ZA 1P80A 1GWHA 3VU3A 1F4JA 1HBZA 1P7YA 4ENPA 4ENSA 3PQ6A 1GGFA 4QOQA 1A4EA 4ENTA 1GGJA 4QOLA 4B40A 4B2YA 1QF7A 1SY7A 3HB6A 3ZJ5A 4QOMA 1M7SA 1M85A 4QOOA 2J2MA 2ISAA 4QORA 3TTXA 1GWEA 1IPHA 4AULA 3PQ4A 3PQ2A 1H7KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PQ7 A;  1GGK A;  1CF9 A;  5BV2 P;  2CAH A;  4BFL A;  1GG9 A;  1GGH A;  3PQ8 A;  3EJ6 A;  1GWF A;  1P81 A;  1H6N A;  3PQ3 A;  4CAB A;  3P9P A;  1GGE A;  4ENQ A;  4BIM A;  4ENR A;  4AUN A;  3PQ5 A;  3TTW A;  2IQF A;  4B31 A;  3P9Q A;  2XF2 A;  4AUM A;  3DY5 A;  2IUF A;  4ENW A;  4AUE A;  3TTU A;  4QON A;  4B5K A;  4E37 A;  4AJ9 A;  1U5U A;  3ZJ4 A;  4B7A A;  1MQF A;  3TTV A;  3P9R A;  1SI8 A;  1QWM A;  2CAG A;  3P9S A;  4ENU A;  2XQ1 A;  4QOP A;  1E93 A;  1QWL A;  4ENV A;  1NM0 A;  2A9E A;  1QWS A;  3TTT A;  1P7Z A;  1P80 A;  1GWH A;  3VU3 A;  1F4J A;  1HBZ A;  1P7Y A;  4ENP A;  4ENS A;  3PQ6 A;  1GGF A;  4QOQ A;  1A4E A;  4ENT A;  1GGJ A;  4QOL A;  4B40 A;  4B2Y A;  1QF7 A;  1SY7 A;  3HB6 A;  3ZJ5 A;  4QOM A;  1M7S A;  1M85 A;  4QOO A;  2J2M A;  2ISA A;  4QOR A;  3TTX A;  1GWE A;  1IPH A;  4AUL A;  3PQ4 A;  3PQ2 A;  1H7K A; 
#chains in the Genus database with same CATH topology
 3PQ7 A;  1GGK A;  4BLC A;  1CF9 A;  5BV2 P;  3NWL A;  2CAH A;  4BFL A;  8CAT A;  1GG9 A;  1TH3 A;  1GGH A;  3PQ8 A;  3EJ6 A;  1GWF A;  1P81 A;  1H6N A;  3PQ3 A;  4CAB A;  3P9P A;  1GGE A;  4ENQ A;  4BIM A;  4ENR A;  4AUN A;  3PQ5 A;  3TTW A;  1QQW A;  2IQF A;  4B31 A;  3P9Q A;  2XF2 A;  4AUM A;  3E4W A;  3DY5 A;  2IUF A;  4ENW A;  3E4Y A;  4AUE A;  3TTU A;  1DGG A;  5GKN A;  4QON A;  4B5K A;  4E37 A;  4AJ9 A;  1U5U A;  1DGH A;  3ZJ4 A;  1DGF A;  1TH4 A;  4B7A A;  1MQF A;  3TTV A;  4B7G A;  3P9R A;  7CAT A;  1TGU A;  1SI8 A;  1QWM A;  2CAG A;  3P9S A;  4ENU A;  2XQ1 A;  4QOP A;  1E93 A;  1QWL A;  3RE8 A;  4ENV A;  1NM0 A;  2A9E A;  1QWS A;  3TTT A;  1P7Z A;  1P80 A;  1GWH A;  1DGH B;  3RGP A;  3VU3 A;  1F4J A;  1HBZ A;  1P7Y A;  4ENP A;  4ENS A;  3PQ6 A;  1GGF A;  4QOQ A;  1A4E A;  4ENT A;  4B7F A;  1GGJ A;  1TH2 A;  4QOL A;  4B40 A;  4B2Y A;  1QF7 A;  1SY7 A;  3HB6 A;  3ZJ5 A;  4QOM A;  1M7S A;  3J7B A;  1M85 A;  4QOO A;  3RGS A;  2J2M A;  2ISA A;  4QOR A;  3TTX A;  1GWE A;  1IPH A;  3PQ4 A;  4AUL A;  3PQ2 A;  1DGB A;  1H7K A;  4B7H A; 
#chains in the Genus database with same CATH homology
 3PQ7 A;  1GGK A;  1CF9 A;  5BV2 P;  2CAH A;  4BFL A;  1GG9 A;  1GGH A;  3PQ8 A;  3EJ6 A;  1GWF A;  1P81 A;  1H6N A;  3PQ3 A;  4CAB A;  3P9P A;  1GGE A;  4ENQ A;  4BIM A;  4ENR A;  4AUN A;  3PQ5 A;  3TTW A;  2IQF A;  4B31 A;  3P9Q A;  2XF2 A;  4AUM A;  3DY5 A;  2IUF A;  4ENW A;  4AUE A;  3TTU A;  4QON A;  4B5K A;  4E37 A;  4AJ9 A;  1U5U A;  3ZJ4 A;  4B7A A;  1MQF A;  3TTV A;  3P9R A;  1SI8 A;  1QWM A;  2CAG A;  3P9S A;  4ENU A;  2XQ1 A;  4QOP A;  1E93 A;  1QWL A;  4ENV A;  1NM0 A;  2A9E A;  1QWS A;  3TTT A;  1P7Z A;  1P80 A;  1GWH A;  3VU3 A;  1F4J A;  1HBZ A;  1P7Y A;  4ENP A;  4ENS A;  3PQ6 A;  1GGF A;  4QOQ A;  1A4E A;  4ENT A;  1GGJ A;  4QOL A;  4B40 A;  4B2Y A;  1QF7 A;  1SY7 A;  3HB6 A;  3ZJ5 A;  4QOM A;  1M7S A;  1M85 A;  4QOO A;  2J2M A;  2ISA A;  4QOR A;  3TTX A;  1GWE A;  1IPH A;  4AUL A;  3PQ4 A;  3PQ2 A;  1H7K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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