4E37A

Crystal structure of p. aeruginosa catalase, kata tetramer
Total Genus 149
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
479
structure length
478
Chain Sequence
EKTRLTTAAGAPVVDNQNVQTAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSAAYGTFTVTHDITPYTRAKIFSQVGKKTDMFLRFSTVAGERGAADAERDIRGFSMRFYTEQGNWDLVGNNTPVFYLRDPLKFPDLNHVVKRDPRTNLRNATFKWDFFSHLPESLHQLTIDFSDRGLPKSYRHIHGFGSHTFSFINANNERFWVKFHFKTQQGIENLTNAEAAEVIAQDRESSQRDLYESIEKGDFPRWKMYVQIMPEKEAATYRYNPFDLTKVWPHGDYPLIEVGFFELNRNPDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAARCPHQVYHRDGGMRVDGNNAHQRVTYEPNSFNQWQEQPDFSEPPLSLEGAADHWNHRVDDDYYSQPAALFHLFTDEQKQRLFANIAEDIRDVPEQIQRRQIGLFLKVDPAYGKGVADALGLKL
50100150200250300350400450400300200100
050100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas aeruginosa
publication title KatA, the Major Catalase in Pseudomonas aeruginosa, Assists in Protecting Anaerobic Bacteria From Metabolic and Exogenous Nitric Oxide
rcsb
molecule keywords Catalase
total genus 149
structure length 478
sequence length 479
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2012-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4e37A00
3P9QA 4B2YA 1QWMA 3ZJ4A 1U5UA 3TTWA 4AUNA 3P9RA 4ENPA 1H7KA 3PQ7A 1GGEA 1P80A 5BV2P 1SI8A 4AUMA 1A4EA 4AULA 3ZJ5A 1GWFA 2XF2A 1NM0A 1GWHA 4B5KA 4ENSA 3P9SA 3PQ6A 2XQ1A 1HBZA 4QORA 1M7SA 3EJ6A 1MQFA 3TTUA 3PQ2A 1CF9A 4AJ9A 4ENTA 4BIMA 4E37A 3VU3A 4QOPA 4QOMA 4B7AA 4B40A 1H6NA 4QOOA 1QF7A 4ENQA 4AUEA 1GG9A 4ENRA 1GWEA 1QWSA 1GGHA 1P81A 4ENVA 1GGJA 3DY5A 4B31A 2J2MA 4QOLA 3P9PA 2CAHA 1QWLA 2ISAA 3HB6A 1IPHA 3TTVA 1P7YA 3PQ5A 4QONA 1P7ZA 2A9EA 4ENUA 4QOQA 2IQFA 1F4JA 3PQ4A 2IUFA 4CABA 1SY7A 1E93A 4BFLA 2CAGA 1M85A 1GGFA 3TTXA 3TTTA 1GGKA 3PQ3A 3PQ8A 4ENWA
chains in the Genus database with same CATH superfamily
3P9QA 4B2YA 1QWMA 3ZJ4A 1U5UA 3TTWA 4AUNA 3P9RA 4ENPA 1H7KA 3PQ7A 1GGEA 7CATA 1P80A 5BV2P 1SI8A 4AUMA 1A4EA 4AULA 3ZJ5A 1TH3A 1GWFA 8CATA 2XF2A 1NM0A 1GWHA 3RE8A 4B5KA 4ENSA 3E4YA 1TGUA 3P9SA 3PQ6A 2XQ1A 1HBZA 4QORA 3J7BA 1M7SA 3EJ6A 3RGSA 1MQFA 3TTUA 3PQ2A 1CF9A 4AJ9A 4ENTA 4B7FA 4BIMA 4E37A 1DGBA 3VU3A 1TH4A 4B7HA 4QOPA 4QOMA 4B7AA 3NWLA 4B40A 1H6NA 4QOOA 1QF7A 4ENQA 4AUEA 1GG9A 4ENRA 1GWEA 1QWSA 1GGHA 1P81A 4ENVA 1GGJA 3DY5A 4B31A 2J2MA 4QOLA 3P9PA 2CAHA 1QQWA 1QWLA 2ISAA 3HB6A 1IPHA 3TTVA 1P7YA 3E4WA 3PQ5A 4QONA 1P7ZA 2A9EA 4ENUA 4QOQA 2IQFA 1F4JA 3PQ4A 2IUFA 4CABA 1DGGA 1SY7A 1DGHA 1E93A 1TH2A 3RGPA 4BFLA 2CAGA 1M85A 1GGFA 4BLCA 3TTXA 1DGHB 3TTTA 1GGKA 5GKNA 4B7GA 1DGFA 3PQ3A 3PQ8A 4ENWA
chains in the Genus database with same CATH topology
3P9QA 4B2YA 1QWMA 3ZJ4A 1U5UA 3TTWA 4AUNA 3P9RA 4ENPA 1H7KA 3PQ7A 1GGEA 1P80A 5BV2P 1SI8A 4AUMA 1A4EA 4AULA 3ZJ5A 1GWFA 2XF2A 1NM0A 1GWHA 4B5KA 4ENSA 3P9SA 3PQ6A 2XQ1A 1HBZA 4QORA 1M7SA 3EJ6A 1MQFA 3TTUA 3PQ2A 1CF9A 4AJ9A 4ENTA 4BIMA 4E37A 3VU3A 4QOPA 4QOMA 4B7AA 4B40A 1H6NA 4QOOA 1QF7A 4ENQA 4AUEA 1GG9A 4ENRA 1GWEA 1QWSA 1GGHA 1P81A 4ENVA 1GGJA 3DY5A 4B31A 2J2MA 4QOLA 3P9PA 2CAHA 1QWLA 2ISAA 3HB6A 1IPHA 3TTVA 1P7YA 3PQ5A 4QONA 1P7ZA 2A9EA 4ENUA 4QOQA 2IQFA 1F4JA 3PQ4A 2IUFA 4CABA 1SY7A 1E93A 4BFLA 2CAGA 1M85A 1GGFA 3TTXA 3TTTA 1GGKA 3PQ3A 3PQ8A 4ENWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P9Q A;  4B2Y A;  1QWM A;  3ZJ4 A;  1U5U A;  3TTW A;  4AUN A;  3P9R A;  4ENP A;  1H7K A;  3PQ7 A;  1GGE A;  1P80 A;  5BV2 P;  1SI8 A;  4AUM A;  1A4E A;  4AUL A;  3ZJ5 A;  1GWF A;  2XF2 A;  1NM0 A;  1GWH A;  4B5K A;  4ENS A;  3P9S A;  3PQ6 A;  2XQ1 A;  1HBZ A;  4QOR A;  1M7S A;  3EJ6 A;  1MQF A;  3TTU A;  3PQ2 A;  1CF9 A;  4AJ9 A;  4ENT A;  4BIM A;  4E37 A;  3VU3 A;  4QOP A;  4QOM A;  4B7A A;  4B40 A;  1H6N A;  4QOO A;  1QF7 A;  4ENQ A;  4AUE A;  1GG9 A;  4ENR A;  1GWE A;  1QWS A;  1GGH A;  1P81 A;  4ENV A;  1GGJ A;  3DY5 A;  4B31 A;  2J2M A;  4QOL A;  3P9P A;  2CAH A;  1QWL A;  2ISA A;  3HB6 A;  1IPH A;  3TTV A;  1P7Y A;  3PQ5 A;  4QON A;  1P7Z A;  2A9E A;  4ENU A;  4QOQ A;  2IQF A;  1F4J A;  3PQ4 A;  2IUF A;  4CAB A;  1SY7 A;  1E93 A;  4BFL A;  2CAG A;  1M85 A;  1GGF A;  3TTX A;  3TTT A;  1GGK A;  3PQ3 A;  3PQ8 A;  4ENW A; 
#chains in the Genus database with same CATH topology
 3P9Q A;  4B2Y A;  1QWM A;  3ZJ4 A;  1U5U A;  3TTW A;  4AUN A;  3P9R A;  4ENP A;  1H7K A;  3PQ7 A;  1GGE A;  7CAT A;  1P80 A;  5BV2 P;  1SI8 A;  4AUM A;  1A4E A;  4AUL A;  3ZJ5 A;  1TH3 A;  1GWF A;  8CAT A;  2XF2 A;  1NM0 A;  1GWH A;  3RE8 A;  4B5K A;  4ENS A;  3E4Y A;  1TGU A;  3P9S A;  3PQ6 A;  2XQ1 A;  1HBZ A;  4QOR A;  3J7B A;  1M7S A;  3EJ6 A;  3RGS A;  1MQF A;  3TTU A;  3PQ2 A;  1CF9 A;  4AJ9 A;  4ENT A;  4B7F A;  4BIM A;  4E37 A;  1DGB A;  3VU3 A;  1TH4 A;  4B7H A;  4QOP A;  4QOM A;  4B7A A;  3NWL A;  4B40 A;  1H6N A;  4QOO A;  1QF7 A;  4ENQ A;  4AUE A;  1GG9 A;  4ENR A;  1GWE A;  1QWS A;  1GGH A;  1P81 A;  4ENV A;  1GGJ A;  3DY5 A;  4B31 A;  2J2M A;  4QOL A;  3P9P A;  2CAH A;  1QQW A;  1QWL A;  2ISA A;  3HB6 A;  1IPH A;  3TTV A;  1P7Y A;  3E4W A;  3PQ5 A;  4QON A;  1P7Z A;  2A9E A;  4ENU A;  4QOQ A;  2IQF A;  1F4J A;  3PQ4 A;  2IUF A;  4CAB A;  1DGG A;  1SY7 A;  1DGH A;  1E93 A;  1TH2 A;  3RGP A;  4BFL A;  2CAG A;  1M85 A;  1GGF A;  4BLC A;  3TTX A;  1DGH B;  3TTT A;  1GGK A;  5GKN A;  4B7G A;  1DGF A;  3PQ3 A;  3PQ8 A;  4ENW A; 
#chains in the Genus database with same CATH homology
 3P9Q A;  4B2Y A;  1QWM A;  3ZJ4 A;  1U5U A;  3TTW A;  4AUN A;  3P9R A;  4ENP A;  1H7K A;  3PQ7 A;  1GGE A;  1P80 A;  5BV2 P;  1SI8 A;  4AUM A;  1A4E A;  4AUL A;  3ZJ5 A;  1GWF A;  2XF2 A;  1NM0 A;  1GWH A;  4B5K A;  4ENS A;  3P9S A;  3PQ6 A;  2XQ1 A;  1HBZ A;  4QOR A;  1M7S A;  3EJ6 A;  1MQF A;  3TTU A;  3PQ2 A;  1CF9 A;  4AJ9 A;  4ENT A;  4BIM A;  4E37 A;  3VU3 A;  4QOP A;  4QOM A;  4B7A A;  4B40 A;  1H6N A;  4QOO A;  1QF7 A;  4ENQ A;  4AUE A;  1GG9 A;  4ENR A;  1GWE A;  1QWS A;  1GGH A;  1P81 A;  4ENV A;  1GGJ A;  3DY5 A;  4B31 A;  2J2M A;  4QOL A;  3P9P A;  2CAH A;  1QWL A;  2ISA A;  3HB6 A;  1IPH A;  3TTV A;  1P7Y A;  3PQ5 A;  4QON A;  1P7Z A;  2A9E A;  4ENU A;  4QOQ A;  2IQF A;  1F4J A;  3PQ4 A;  2IUF A;  4CAB A;  1SY7 A;  1E93 A;  4BFL A;  2CAG A;  1M85 A;  1GGF A;  3TTX A;  3TTT A;  1GGK A;  3PQ3 A;  3PQ8 A;  4ENW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.