4F0VA

Crystal structure of type effector tse1 from pseudomonas aeruginousa
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Putative uncharacterized protein
total genus 47
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-05-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f0vA00
4FGEA 3H41A 3PBCA 2EVRA 3NPFA 2LRJA 2IF6A 3I86A 3PVQA 4FDYA 3VPIA 3M1UA 2IOBA 4LJ1A 4Q4NA 4F0WA 2K1GA 4CGKA 2IO8A 3NE0A 4FGDA 4R0KA 2K3AA 4FQAA 4Q4TA 3GT2A 2IOAA 4HZBA 2XIVA 2FG0A 4HZ9A 4Q4GX 2IO9A 2VPSA 4F4MA 3A30A 3A2YA 4EQAA 4JXBA 3A2ZA 3PBIA 4F0VA 3S0QA 4CSHA 4CT3A 3O98A 4HPEA 3VPJA 4OLKA 2VOBA 4FQBA 4FGIA 4EQ8A 2HBWA 2IO7A 2VPMA 4EOBA 3KW0A
chains in the Genus database with same CATH superfamily
4FGEA 3H41A 3PBCA 2EVRA 3NPFA 2WP7A 2LRJA 2IF6A 3I86A 3PVQA 4FDYA 3VPIA 3M1UA 2IOBA 4LJ1A 4Q4NA 4F0WA 2K1GA 4CGKA 4JURA 2IO8A 3NE0A 4FGDA 4R0KA 2K3AA 3EBQA 4FQAA 3GT2A 4Q4TA 2IOAA 4HZBA 2XIVA 2FG0A 4HZ9A 4Q4GX 2IO9A 2VPSA 4F4MA 3A30A 3A2YA 4EQAA 4JXBA 3A2ZA 3PBIA 4F0VA 3S0QA 4CSHA 4CT3A 3O98A 4HFKA 4J30A 4HPEA 4J32A 4OLKA 3VPJA 2VOBA 4FQBA 4FGIA 4EQ8A 2HBWA 2IO7A 4HFFA 2VPMA 4HFLA 4EOBA 3KW0A
chains in the Genus database with same CATH topology
4FGEA 3H41A 3PBCA 2EVRA 3NPFA 2LRJA 2IF6A 3I86A 3PVQA 4FDYA 3VPIA 3M1UA 2IOBA 4LJ1A 4Q4NA 4F0WA 2K1GA 4CGKA 2IO8A 3NE0A 4FGDA 4R0KA 2K3AA 4FQAA 4Q4TA 3GT2A 2IOAA 4HZBA 2XIVA 2FG0A 4HZ9A 4Q4GX 2IO9A 2VPSA 4F4MA 3A30A 3A2YA 4EQAA 4JXBA 3A2ZA 3PBIA 4F0VA 3S0QA 4CSHA 4CT3A 3O98A 4HPEA 3VPJA 4OLKA 2VOBA 4FQBA 4FGIA 4EQ8A 2HBWA 2IO7A 2VPMA 4EOBA 3KW0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FGE A;  3H41 A;  3PBC A;  2EVR A;  3NPF A;  2LRJ A;  2IF6 A;  3I86 A;  3PVQ A;  4FDY A;  3VPI A;  3M1U A;  2IOB A;  4LJ1 A;  4Q4N A;  4F0W A;  2K1G A;  4CGK A;  2IO8 A;  3NE0 A;  4FGD A;  4R0K A;  2K3A A;  4FQA A;  4Q4T A;  3GT2 A;  2IOA A;  4HZB A;  2XIV A;  2FG0 A;  4HZ9 A;  4Q4G X;  2IO9 A;  2VPS A;  4F4M A;  3A30 A;  3A2Y A;  4EQA A;  4JXB A;  3A2Z A;  3PBI A;  4F0V A;  3S0Q A;  4CSH A;  4CT3 A;  3O98 A;  4HPE A;  3VPJ A;  4OLK A;  2VOB A;  4FQB A;  4FGI A;  4EQ8 A;  2HBW A;  2IO7 A;  2VPM A;  4EOB A;  3KW0 A; 
#chains in the Genus database with same CATH topology
 4FGE A;  3H41 A;  3PBC A;  2EVR A;  3NPF A;  2WP7 A;  2LRJ A;  2IF6 A;  3I86 A;  3PVQ A;  4FDY A;  3VPI A;  3M1U A;  2IOB A;  4LJ1 A;  4Q4N A;  4F0W A;  2K1G A;  4CGK A;  4JUR A;  2IO8 A;  3NE0 A;  4FGD A;  4R0K A;  2K3A A;  3EBQ A;  4FQA A;  3GT2 A;  4Q4T A;  2IOA A;  4HZB A;  2XIV A;  2FG0 A;  4HZ9 A;  4Q4G X;  2IO9 A;  2VPS A;  4F4M A;  3A30 A;  3A2Y A;  4EQA A;  4JXB A;  3A2Z A;  3PBI A;  4F0V A;  3S0Q A;  4CSH A;  4CT3 A;  3O98 A;  4HFK A;  4J30 A;  4HPE A;  4J32 A;  4OLK A;  3VPJ A;  2VOB A;  4FQB A;  4FGI A;  4EQ8 A;  2HBW A;  2IO7 A;  4HFF A;  2VPM A;  4HFL A;  4EOB A;  3KW0 A; 
#chains in the Genus database with same CATH homology
 4FGE A;  3H41 A;  3PBC A;  2EVR A;  3NPF A;  2LRJ A;  2IF6 A;  3I86 A;  3PVQ A;  4FDY A;  3VPI A;  3M1U A;  2IOB A;  4LJ1 A;  4Q4N A;  4F0W A;  2K1G A;  4CGK A;  2IO8 A;  3NE0 A;  4FGD A;  4R0K A;  2K3A A;  4FQA A;  4Q4T A;  3GT2 A;  2IOA A;  4HZB A;  2XIV A;  2FG0 A;  4HZ9 A;  4Q4G X;  2IO9 A;  2VPS A;  4F4M A;  3A30 A;  3A2Y A;  4EQA A;  4JXB A;  3A2Z A;  3PBI A;  4F0V A;  3S0Q A;  4CSH A;  4CT3 A;  3O98 A;  4HPE A;  3VPJ A;  4OLK A;  2VOB A;  4FQB A;  4FGI A;  4EQ8 A;  2HBW A;  2IO7 A;  2VPM A;  4EOB A;  3KW0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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