4F0VA

Crystal structure of type effector tse1 from pseudomonas aeruginousa
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Putative uncharacterized protein
total genus 47
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-05-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f0vA00
4Q4GX 3PBIA 4Q4TA 4FQAA 4F0WA 2IO9A 3A30A 4LJ1A 4OLKA 4FQBA 4R0KA 3NE0A 2K3AA 3H41A 4F4MA 3PVQA 2EVRA 3NPFA 2VPSA 3VPIA 4FGIA 3A2YA 4CT3A 4EQ8A 2VOBA 2XIVA 3S0QA 4HZBA 2VPMA 4FGEA 2IOAA 4JXBA 2LRJA 4HPEA 4HZ9A 2IO7A 4FDYA 4CSHA 4Q4NA 4CGKA 4FGDA 4EOBA 2HBWA 2FG0A 3I86A 3M1UA 4F0VA 2IF6A 3GT2A 3VPJA 2K1GA 2IOBA 3PBCA 2IO8A 4EQAA 3A2ZA 3O98A 3KW0A
chains in the Genus database with same CATH superfamily
4Q4GX 3PBIA 4HFFA 4Q4TA 4FQAA 4F0WA 2IO9A 3A30A 4LJ1A 4OLKA 4FQBA 4R0KA 3NE0A 2K3AA 3H41A 4F4MA 3PVQA 2EVRA 4HFKA 3NPFA 2VPSA 3VPIA 4FGIA 3A2YA 4J32A 4J30A 2VOBA 2XIVA 4CT3A 4EQ8A 3S0QA 4HZBA 2VPMA 4FGEA 2IOAA 4JXBA 2LRJA 4HFLA 4HPEA 3EBQA 4HZ9A 2IO7A 4FDYA 4CSHA 4Q4NA 4CGKA 4FGDA 4EOBA 2HBWA 2FG0A 3I86A 3M1UA 4F0VA 2IF6A 2WP7A 3GT2A 3VPJA 2K1GA 2IOBA 3PBCA 2IO8A 4EQAA 3A2ZA 3O98A 3KW0A 4JURA
chains in the Genus database with same CATH topology
4Q4GX 3PBIA 4Q4TA 4FQAA 4F0WA 2IO9A 3A30A 4LJ1A 4OLKA 4FQBA 4R0KA 3NE0A 2K3AA 3H41A 4F4MA 3PVQA 2EVRA 3NPFA 2VPSA 3VPIA 4FGIA 3A2YA 4CT3A 4EQ8A 2VOBA 2XIVA 3S0QA 4HZBA 2VPMA 4FGEA 2IOAA 4JXBA 2LRJA 4HPEA 4HZ9A 2IO7A 4FDYA 4CSHA 4Q4NA 4CGKA 4FGDA 4EOBA 2HBWA 2FG0A 3I86A 3M1UA 4F0VA 2IF6A 3GT2A 3VPJA 2K1GA 2IOBA 3PBCA 2IO8A 4EQAA 3A2ZA 3O98A 3KW0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q4G X;  3PBI A;  4Q4T A;  4FQA A;  4F0W A;  2IO9 A;  3A30 A;  4LJ1 A;  4OLK A;  4FQB A;  4R0K A;  3NE0 A;  2K3A A;  3H41 A;  4F4M A;  3PVQ A;  2EVR A;  3NPF A;  2VPS A;  3VPI A;  4FGI A;  3A2Y A;  4CT3 A;  4EQ8 A;  2VOB A;  2XIV A;  3S0Q A;  4HZB A;  2VPM A;  4FGE A;  2IOA A;  4JXB A;  2LRJ A;  4HPE A;  4HZ9 A;  2IO7 A;  4FDY A;  4CSH A;  4Q4N A;  4CGK A;  4FGD A;  4EOB A;  2HBW A;  2FG0 A;  3I86 A;  3M1U A;  4F0V A;  2IF6 A;  3GT2 A;  3VPJ A;  2K1G A;  2IOB A;  3PBC A;  2IO8 A;  4EQA A;  3A2Z A;  3O98 A;  3KW0 A; 
#chains in the Genus database with same CATH topology
 4Q4G X;  3PBI A;  4HFF A;  4Q4T A;  4FQA A;  4F0W A;  2IO9 A;  3A30 A;  4LJ1 A;  4OLK A;  4FQB A;  4R0K A;  3NE0 A;  2K3A A;  3H41 A;  4F4M A;  3PVQ A;  2EVR A;  4HFK A;  3NPF A;  2VPS A;  3VPI A;  4FGI A;  3A2Y A;  4J32 A;  4J30 A;  2VOB A;  2XIV A;  4CT3 A;  4EQ8 A;  3S0Q A;  4HZB A;  2VPM A;  4FGE A;  2IOA A;  4JXB A;  2LRJ A;  4HFL A;  4HPE A;  3EBQ A;  4HZ9 A;  2IO7 A;  4FDY A;  4CSH A;  4Q4N A;  4CGK A;  4FGD A;  4EOB A;  2HBW A;  2FG0 A;  3I86 A;  3M1U A;  4F0V A;  2IF6 A;  2WP7 A;  3GT2 A;  3VPJ A;  2K1G A;  2IOB A;  3PBC A;  2IO8 A;  4EQA A;  3A2Z A;  3O98 A;  3KW0 A;  4JUR A; 
#chains in the Genus database with same CATH homology
 4Q4G X;  3PBI A;  4Q4T A;  4FQA A;  4F0W A;  2IO9 A;  3A30 A;  4LJ1 A;  4OLK A;  4FQB A;  4R0K A;  3NE0 A;  2K3A A;  3H41 A;  4F4M A;  3PVQ A;  2EVR A;  3NPF A;  2VPS A;  3VPI A;  4FGI A;  3A2Y A;  4CT3 A;  4EQ8 A;  2VOB A;  2XIV A;  3S0Q A;  4HZB A;  2VPM A;  4FGE A;  2IOA A;  4JXB A;  2LRJ A;  4HPE A;  4HZ9 A;  2IO7 A;  4FDY A;  4CSH A;  4Q4N A;  4CGK A;  4FGD A;  4EOB A;  2HBW A;  2FG0 A;  3I86 A;  3M1U A;  4F0V A;  2IF6 A;  3GT2 A;  3VPJ A;  2K1G A;  2IOB A;  3PBC A;  2IO8 A;  4EQA A;  3A2Z A;  3O98 A;  3KW0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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