4F0WA

Crystal structure of type effector tse1 c30a mutant from pseudomonas aeruginousa
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Putative uncharacterized protein
total genus 43
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-05-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f0wA00
4FQAA 3M1UA 2IF6A 2XIVA 3I86A 4CT3A 4FGEA 3KW0A 4FGDA 4FQBA 2IO9A 3A30A 4CGKA 4FGIA 4JXBA 3O98A 2IO8A 4EQAA 4HZ9A 2VPMA 3H41A 2K1GA 3NPFA 4FDYA 4Q4GX 4F0VA 3S0QA 4HPEA 2VPSA 2LRJA 4CSHA 4EOBA 4F4MA 3PBIA 3PVQA 2K3AA 2FG0A 2HBWA 2IOBA 4Q4TA 3PBCA 4Q4NA 3VPJA 3A2ZA 4R0KA 4HZBA 4LJ1A 2IO7A 4EQ8A 2VOBA 3GT2A 4F0WA 3VPIA 3A2YA 4OLKA 3NE0A 2IOAA 2EVRA
chains in the Genus database with same CATH superfamily
4FQAA 3M1UA 4JURA 2IF6A 2XIVA 3I86A 4CT3A 4FGEA 3EBQA 3KW0A 4FGDA 2IO9A 3A30A 4FQBA 4CGKA 4FGIA 4JXBA 3O98A 2IO8A 4EQAA 4HZ9A 2VPMA 4HFFA 3H41A 2K1GA 3NPFA 4J32A 4FDYA 4Q4GX 4F0VA 4HFLA 3S0QA 4HPEA 2VPSA 2LRJA 4CSHA 4EOBA 4F4MA 3PBIA 3PVQA 2K3AA 2FG0A 2HBWA 2IOBA 4Q4TA 3PBCA 4Q4NA 3VPJA 3A2ZA 4HFKA 4HZBA 4LJ1A 2IO7A 4R0KA 4EQ8A 2VOBA 3GT2A 4F0WA 3VPIA 2WP7A 3A2YA 4OLKA 3NE0A 2IOAA 2EVRA 4J30A
chains in the Genus database with same CATH topology
4FQAA 3M1UA 2IF6A 2XIVA 3I86A 4CT3A 4FGEA 3KW0A 4FGDA 4FQBA 2IO9A 3A30A 4CGKA 4FGIA 4JXBA 3O98A 2IO8A 4EQAA 4HZ9A 2VPMA 3H41A 2K1GA 3NPFA 4FDYA 4Q4GX 4F0VA 3S0QA 4HPEA 2VPSA 2LRJA 4CSHA 4EOBA 4F4MA 3PBIA 3PVQA 2K3AA 2FG0A 2HBWA 2IOBA 4Q4TA 3PBCA 4Q4NA 3VPJA 3A2ZA 4R0KA 4HZBA 4LJ1A 2IO7A 4EQ8A 2VOBA 3GT2A 4F0WA 3VPIA 3A2YA 4OLKA 3NE0A 2IOAA 2EVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FQA A;  3M1U A;  2IF6 A;  2XIV A;  3I86 A;  4CT3 A;  4FGE A;  3KW0 A;  4FGD A;  4FQB A;  2IO9 A;  3A30 A;  4CGK A;  4FGI A;  4JXB A;  3O98 A;  2IO8 A;  4EQA A;  4HZ9 A;  2VPM A;  3H41 A;  2K1G A;  3NPF A;  4FDY A;  4Q4G X;  4F0V A;  3S0Q A;  4HPE A;  2VPS A;  2LRJ A;  4CSH A;  4EOB A;  4F4M A;  3PBI A;  3PVQ A;  2K3A A;  2FG0 A;  2HBW A;  2IOB A;  4Q4T A;  3PBC A;  4Q4N A;  3VPJ A;  3A2Z A;  4R0K A;  4HZB A;  4LJ1 A;  2IO7 A;  4EQ8 A;  2VOB A;  3GT2 A;  4F0W A;  3VPI A;  3A2Y A;  4OLK A;  3NE0 A;  2IOA A;  2EVR A; 
#chains in the Genus database with same CATH topology
 4FQA A;  3M1U A;  4JUR A;  2IF6 A;  2XIV A;  3I86 A;  4CT3 A;  4FGE A;  3EBQ A;  3KW0 A;  4FGD A;  2IO9 A;  3A30 A;  4FQB A;  4CGK A;  4FGI A;  4JXB A;  3O98 A;  2IO8 A;  4EQA A;  4HZ9 A;  2VPM A;  4HFF A;  3H41 A;  2K1G A;  3NPF A;  4J32 A;  4FDY A;  4Q4G X;  4F0V A;  4HFL A;  3S0Q A;  4HPE A;  2VPS A;  2LRJ A;  4CSH A;  4EOB A;  4F4M A;  3PBI A;  3PVQ A;  2K3A A;  2FG0 A;  2HBW A;  2IOB A;  4Q4T A;  3PBC A;  4Q4N A;  3VPJ A;  3A2Z A;  4HFK A;  4HZB A;  4LJ1 A;  2IO7 A;  4R0K A;  4EQ8 A;  2VOB A;  3GT2 A;  4F0W A;  3VPI A;  2WP7 A;  3A2Y A;  4OLK A;  3NE0 A;  2IOA A;  2EVR A;  4J30 A; 
#chains in the Genus database with same CATH homology
 4FQA A;  3M1U A;  2IF6 A;  2XIV A;  3I86 A;  4CT3 A;  4FGE A;  3KW0 A;  4FGD A;  4FQB A;  2IO9 A;  3A30 A;  4CGK A;  4FGI A;  4JXB A;  3O98 A;  2IO8 A;  4EQA A;  4HZ9 A;  2VPM A;  3H41 A;  2K1G A;  3NPF A;  4FDY A;  4Q4G X;  4F0V A;  3S0Q A;  4HPE A;  2VPS A;  2LRJ A;  4CSH A;  4EOB A;  4F4M A;  3PBI A;  3PVQ A;  2K3A A;  2FG0 A;  2HBW A;  2IOB A;  4Q4T A;  3PBC A;  4Q4N A;  3VPJ A;  3A2Z A;  4R0K A;  4HZB A;  4LJ1 A;  2IO7 A;  4EQ8 A;  2VOB A;  3GT2 A;  4F0W A;  3VPI A;  3A2Y A;  4OLK A;  3NE0 A;  2IOA A;  2EVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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