4F4MA

Structure of the type vi peptidoglycan amidase effector tse1 (c30a) from pseudomonas aeruginosa
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
147
structure length
147
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
pubmed doi rcsb
molecule tags Hydrolase regulator
source organism Pseudomonas aeruginosa
molecule keywords papain peptidoglycan amidase effector Tse1
total genus 40
structure length 147
sequence length 147
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-05-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f4mA00
3A2ZA 4EOBA 2EVRA 3PBCA 3NPFA 4OLKA 2IO7A 2VPSA 4R0KA 4FQBA 3VPIA 2FG0A 4F4MA 3I86A 3H41A 3PVQA 4HPEA 2XIVA 2K1GA 4CGKA 2IOAA 2HBWA 4HZ9A 4Q4NA 3PBIA 4FGIA 4JXBA 2IO8A 4EQ8A 4F0VA 3VPJA 3M1UA 4EQAA 3NE0A 2LRJA 4CT3A 4FQAA 3GT2A 2IO9A 3A30A 4HZBA 4FGDA 3O98A 4LJ1A 2VPMA 4Q4GX 3A2YA 2K3AA 4F0WA 2IOBA 3KW0A 4FGEA 2IF6A 2VOBA 4FDYA 3S0QA 4Q4TA 4CSHA
chains in the Genus database with same CATH superfamily
3A2ZA 4EOBA 2EVRA 3PBCA 3NPFA 4OLKA 2IO7A 2VPSA 4R0KA 4FQBA 3VPIA 2FG0A 4F4MA 3I86A 3H41A 3PVQA 4J32A 4HPEA 2XIVA 2K1GA 4CGKA 2IOAA 2HBWA 4HZ9A 4Q4NA 3PBIA 4FGIA 4JXBA 2IO8A 4EQ8A 4F0VA 2WP7A 3VPJA 4HFFA 4EQAA 3M1UA 4HFLA 4JURA 3NE0A 2LRJA 3EBQA 4HFKA 4FQAA 3GT2A 4CT3A 2IO9A 3A30A 4HZBA 4FGDA 4J30A 3O98A 4LJ1A 2VPMA 4Q4GX 3A2YA 2K3AA 4F0WA 2IOBA 3KW0A 4FGEA 2IF6A 2VOBA 4FDYA 3S0QA 4Q4TA 4CSHA
chains in the Genus database with same CATH topology
3A2ZA 4EOBA 2EVRA 3PBCA 3NPFA 4OLKA 2IO7A 2VPSA 4R0KA 4FQBA 3VPIA 2FG0A 4F4MA 3I86A 3H41A 3PVQA 4HPEA 2XIVA 2K1GA 4CGKA 2IOAA 2HBWA 4HZ9A 4Q4NA 3PBIA 4FGIA 4JXBA 2IO8A 4EQ8A 4F0VA 3VPJA 3M1UA 4EQAA 3NE0A 2LRJA 4CT3A 4FQAA 3GT2A 2IO9A 3A30A 4HZBA 4FGDA 3O98A 4LJ1A 2VPMA 4Q4GX 3A2YA 2K3AA 4F0WA 2IOBA 3KW0A 4FGEA 2IF6A 2VOBA 4FDYA 3S0QA 4Q4TA 4CSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2Z A;  4EOB A;  2EVR A;  3PBC A;  3NPF A;  4OLK A;  2IO7 A;  2VPS A;  4R0K A;  4FQB A;  3VPI A;  2FG0 A;  4F4M A;  3I86 A;  3H41 A;  3PVQ A;  4HPE A;  2XIV A;  2K1G A;  4CGK A;  2IOA A;  2HBW A;  4HZ9 A;  4Q4N A;  3PBI A;  4FGI A;  4JXB A;  2IO8 A;  4EQ8 A;  4F0V A;  3VPJ A;  3M1U A;  4EQA A;  3NE0 A;  2LRJ A;  4CT3 A;  4FQA A;  3GT2 A;  2IO9 A;  3A30 A;  4HZB A;  4FGD A;  3O98 A;  4LJ1 A;  2VPM A;  4Q4G X;  3A2Y A;  2K3A A;  4F0W A;  2IOB A;  3KW0 A;  4FGE A;  2IF6 A;  2VOB A;  4FDY A;  3S0Q A;  4Q4T A;  4CSH A; 
#chains in the Genus database with same CATH topology
 3A2Z A;  4EOB A;  2EVR A;  3PBC A;  3NPF A;  4OLK A;  2IO7 A;  2VPS A;  4R0K A;  4FQB A;  3VPI A;  2FG0 A;  4F4M A;  3I86 A;  3H41 A;  3PVQ A;  4J32 A;  4HPE A;  2XIV A;  2K1G A;  4CGK A;  2IOA A;  2HBW A;  4HZ9 A;  4Q4N A;  3PBI A;  4FGI A;  4JXB A;  2IO8 A;  4EQ8 A;  4F0V A;  2WP7 A;  3VPJ A;  4HFF A;  4EQA A;  3M1U A;  4HFL A;  4JUR A;  3NE0 A;  2LRJ A;  3EBQ A;  4HFK A;  4FQA A;  3GT2 A;  4CT3 A;  2IO9 A;  3A30 A;  4HZB A;  4FGD A;  4J30 A;  3O98 A;  4LJ1 A;  2VPM A;  4Q4G X;  3A2Y A;  2K3A A;  4F0W A;  2IOB A;  3KW0 A;  4FGE A;  2IF6 A;  2VOB A;  4FDY A;  3S0Q A;  4Q4T A;  4CSH A; 
#chains in the Genus database with same CATH homology
 3A2Z A;  4EOB A;  2EVR A;  3PBC A;  3NPF A;  4OLK A;  2IO7 A;  2VPS A;  4R0K A;  4FQB A;  3VPI A;  2FG0 A;  4F4M A;  3I86 A;  3H41 A;  3PVQ A;  4HPE A;  2XIV A;  2K1G A;  4CGK A;  2IOA A;  2HBW A;  4HZ9 A;  4Q4N A;  3PBI A;  4FGI A;  4JXB A;  2IO8 A;  4EQ8 A;  4F0V A;  3VPJ A;  3M1U A;  4EQA A;  3NE0 A;  2LRJ A;  4CT3 A;  4FQA A;  3GT2 A;  2IO9 A;  3A30 A;  4HZB A;  4FGD A;  3O98 A;  4LJ1 A;  2VPM A;  4Q4G X;  3A2Y A;  2K3A A;  4F0W A;  2IOB A;  3KW0 A;  4FGE A;  2IF6 A;  2VOB A;  4FDY A;  3S0Q A;  4Q4T A;  4CSH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...