4F4MA

Structure of the type vi peptidoglycan amidase effector tse1 (c30a) from pseudomonas aeruginosa
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
147
structure length
147
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
pubmed doi rcsb
molecule tags Hydrolase regulator
source organism Pseudomonas aeruginosa
molecule keywords papain peptidoglycan amidase effector Tse1
total genus 40
structure length 147
sequence length 147
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-05-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f4mA00
4HZBA 3VPIA 4CT3A 4HPEA 4CGKA 3A2YA 4R0KA 4F4MA 4JXBA 4FGEA 3A30A 3M1UA 3S0QA 3H41A 4FGDA 2VPMA 3NPFA 2IF6A 4FQBA 4LJ1A 2EVRA 4EOBA 4F0WA 2VPSA 4HZ9A 2FG0A 3O98A 4FDYA 4Q4NA 4Q4TA 2IO8A 3NE0A 2HBWA 3PVQA 4F0VA 2K1GA 2IO7A 3PBCA 4OLKA 3PBIA 4FQAA 4EQAA 2IO9A 3VPJA 2K3AA 3GT2A 2IOAA 3KW0A 4EQ8A 2VOBA 4Q4GX 3I86A 4CSHA 3A2ZA 2LRJA 2IOBA 4FGIA 2XIVA
chains in the Genus database with same CATH superfamily
4HZBA 3VPIA 4CT3A 4HPEA 4CGKA 3A2YA 2WP7A 4JURA 4R0KA 4F4MA 4JXBA 4FGEA 3A30A 3M1UA 4HFKA 3S0QA 3H41A 4FGDA 2VPMA 3NPFA 2IF6A 4FQBA 4LJ1A 2EVRA 4EOBA 4F0WA 2VPSA 4HZ9A 2FG0A 3O98A 4FDYA 4HFFA 4HFLA 4Q4NA 3NE0A 4Q4TA 2HBWA 3PVQA 4J32A 4F0VA 2K1GA 2IO7A 3PBCA 4OLKA 3PBIA 4FQAA 4EQAA 2IO9A 3EBQA 4J30A 2K3AA 3VPJA 3GT2A 2IOAA 3KW0A 4EQ8A 2VOBA 4Q4GX 3I86A 4CSHA 3A2ZA 2IO8A 2LRJA 2IOBA 4FGIA 2XIVA
chains in the Genus database with same CATH topology
4HZBA 3VPIA 4CT3A 4HPEA 4CGKA 3A2YA 4R0KA 4F4MA 4JXBA 4FGEA 3A30A 3M1UA 3S0QA 3H41A 4FGDA 2VPMA 3NPFA 2IF6A 4FQBA 4LJ1A 2EVRA 4EOBA 4F0WA 2VPSA 4HZ9A 2FG0A 3O98A 4FDYA 4Q4NA 4Q4TA 2IO8A 3NE0A 2HBWA 3PVQA 4F0VA 2K1GA 2IO7A 3PBCA 4OLKA 3PBIA 4FQAA 4EQAA 2IO9A 3VPJA 2K3AA 3GT2A 2IOAA 3KW0A 4EQ8A 2VOBA 4Q4GX 3I86A 4CSHA 3A2ZA 2LRJA 2IOBA 4FGIA 2XIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HZB A;  3VPI A;  4CT3 A;  4HPE A;  4CGK A;  3A2Y A;  4R0K A;  4F4M A;  4JXB A;  4FGE A;  3A30 A;  3M1U A;  3S0Q A;  3H41 A;  4FGD A;  2VPM A;  3NPF A;  2IF6 A;  4FQB A;  4LJ1 A;  2EVR A;  4EOB A;  4F0W A;  2VPS A;  4HZ9 A;  2FG0 A;  3O98 A;  4FDY A;  4Q4N A;  4Q4T A;  2IO8 A;  3NE0 A;  2HBW A;  3PVQ A;  4F0V A;  2K1G A;  2IO7 A;  3PBC A;  4OLK A;  3PBI A;  4FQA A;  4EQA A;  2IO9 A;  3VPJ A;  2K3A A;  3GT2 A;  2IOA A;  3KW0 A;  4EQ8 A;  2VOB A;  4Q4G X;  3I86 A;  4CSH A;  3A2Z A;  2LRJ A;  2IOB A;  4FGI A;  2XIV A; 
#chains in the Genus database with same CATH topology
 4HZB A;  3VPI A;  4CT3 A;  4HPE A;  4CGK A;  3A2Y A;  2WP7 A;  4JUR A;  4R0K A;  4F4M A;  4JXB A;  4FGE A;  3A30 A;  3M1U A;  4HFK A;  3S0Q A;  3H41 A;  4FGD A;  2VPM A;  3NPF A;  2IF6 A;  4FQB A;  4LJ1 A;  2EVR A;  4EOB A;  4F0W A;  2VPS A;  4HZ9 A;  2FG0 A;  3O98 A;  4FDY A;  4HFF A;  4HFL A;  4Q4N A;  3NE0 A;  4Q4T A;  2HBW A;  3PVQ A;  4J32 A;  4F0V A;  2K1G A;  2IO7 A;  3PBC A;  4OLK A;  3PBI A;  4FQA A;  4EQA A;  2IO9 A;  3EBQ A;  4J30 A;  2K3A A;  3VPJ A;  3GT2 A;  2IOA A;  3KW0 A;  4EQ8 A;  2VOB A;  4Q4G X;  3I86 A;  4CSH A;  3A2Z A;  2IO8 A;  2LRJ A;  2IOB A;  4FGI A;  2XIV A; 
#chains in the Genus database with same CATH homology
 4HZB A;  3VPI A;  4CT3 A;  4HPE A;  4CGK A;  3A2Y A;  4R0K A;  4F4M A;  4JXB A;  4FGE A;  3A30 A;  3M1U A;  3S0Q A;  3H41 A;  4FGD A;  2VPM A;  3NPF A;  2IF6 A;  4FQB A;  4LJ1 A;  2EVR A;  4EOB A;  4F0W A;  2VPS A;  4HZ9 A;  2FG0 A;  3O98 A;  4FDY A;  4Q4N A;  4Q4T A;  2IO8 A;  3NE0 A;  2HBW A;  3PVQ A;  4F0V A;  2K1G A;  2IO7 A;  3PBC A;  4OLK A;  3PBI A;  4FQA A;  4EQA A;  2IO9 A;  3VPJ A;  2K3A A;  3GT2 A;  2IOA A;  3KW0 A;  4EQ8 A;  2VOB A;  4Q4G X;  3I86 A;  4CSH A;  3A2Z A;  2LRJ A;  2IOB A;  4FGI A;  2XIV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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