4FQAA

Crystal structure of toxic effector tse1
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
155
structure length
155
Chain Sequence
DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRASLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight on toxic effector Tse1
rcsb
molecule tags Toxin
source organism Pseudomonas aeruginosa pao1
molecule keywords toxic effector Tse1
total genus 41
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2012-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4fqaA00
3A2YA 4F0VA 3NE0A 2IOAA 3H41A 3A30A 4LJ1A 3NPFA 3S0QA 3VPIA 2IO8A 4FDYA 4Q4GX 4F0WA 3I86A 2EVRA 4FGDA 4FGEA 3PVQA 4HZBA 3O98A 4CT3A 4OLKA 4F4MA 2VOBA 4FQBA 3VPJA 2K1GA 4EQAA 3GT2A 2IO9A 2IOBA 4EOBA 4Q4NA 2FG0A 2IO7A 2IF6A 4Q4TA 3A2ZA 2VPMA 3PBCA 4FGIA 3KW0A 4FQAA 4R0KA 2HBWA 4CSHA 2K3AA 4HZ9A 3PBIA 4JXBA 2XIVA 4HPEA 3M1UA 4EQ8A 4CGKA 2VPSA 2LRJA
chains in the Genus database with same CATH superfamily
3A2YA 4J32A 4F0VA 3NE0A 2IOAA 2WP7A 3H41A 3A30A 4J30A 4LJ1A 3NPFA 3S0QA 3VPIA 2IO8A 4FDYA 4Q4GX 4F0WA 3I86A 2EVRA 4FGDA 4FGEA 3PVQA 4HZBA 3O98A 4CT3A 4OLKA 4F4MA 2VOBA 4FQBA 3VPJA 2K1GA 4EQAA 3GT2A 4HFKA 2IO9A 2IOBA 4EOBA 4Q4NA 2FG0A 2IO7A 2IF6A 4Q4TA 3A2ZA 2VPMA 3PBCA 4FGIA 3KW0A 4FQAA 4R0KA 2HBWA 4CSHA 2K3AA 4HZ9A 3PBIA 3EBQA 4JXBA 2XIVA 4HPEA 3M1UA 4HFLA 4HFFA 4CGKA 2VPSA 4JURA 4EQ8A 2LRJA
chains in the Genus database with same CATH topology
3A2YA 4F0VA 3NE0A 2IOAA 3H41A 3A30A 4LJ1A 3NPFA 3S0QA 3VPIA 2IO8A 4FDYA 4Q4GX 4F0WA 3I86A 2EVRA 4FGDA 4FGEA 3PVQA 4HZBA 3O98A 4CT3A 4OLKA 4F4MA 2VOBA 4FQBA 3VPJA 2K1GA 4EQAA 3GT2A 2IO9A 2IOBA 4EOBA 4Q4NA 2FG0A 2IO7A 2IF6A 4Q4TA 3A2ZA 2VPMA 3PBCA 4FGIA 3KW0A 4FQAA 4R0KA 2HBWA 4CSHA 2K3AA 4HZ9A 3PBIA 4JXBA 2XIVA 4HPEA 3M1UA 4EQ8A 4CGKA 2VPSA 2LRJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2Y A;  4F0V A;  3NE0 A;  2IOA A;  3H41 A;  3A30 A;  4LJ1 A;  3NPF A;  3S0Q A;  3VPI A;  2IO8 A;  4FDY A;  4Q4G X;  4F0W A;  3I86 A;  2EVR A;  4FGD A;  4FGE A;  3PVQ A;  4HZB A;  3O98 A;  4CT3 A;  4OLK A;  4F4M A;  2VOB A;  4FQB A;  3VPJ A;  2K1G A;  4EQA A;  3GT2 A;  2IO9 A;  2IOB A;  4EOB A;  4Q4N A;  2FG0 A;  2IO7 A;  2IF6 A;  4Q4T A;  3A2Z A;  2VPM A;  3PBC A;  4FGI A;  3KW0 A;  4FQA A;  4R0K A;  2HBW A;  4CSH A;  2K3A A;  4HZ9 A;  3PBI A;  4JXB A;  2XIV A;  4HPE A;  3M1U A;  4EQ8 A;  4CGK A;  2VPS A;  2LRJ A; 
#chains in the Genus database with same CATH topology
 3A2Y A;  4J32 A;  4F0V A;  3NE0 A;  2IOA A;  2WP7 A;  3H41 A;  3A30 A;  4J30 A;  4LJ1 A;  3NPF A;  3S0Q A;  3VPI A;  2IO8 A;  4FDY A;  4Q4G X;  4F0W A;  3I86 A;  2EVR A;  4FGD A;  4FGE A;  3PVQ A;  4HZB A;  3O98 A;  4CT3 A;  4OLK A;  4F4M A;  2VOB A;  4FQB A;  3VPJ A;  2K1G A;  4EQA A;  3GT2 A;  4HFK A;  2IO9 A;  2IOB A;  4EOB A;  4Q4N A;  2FG0 A;  2IO7 A;  2IF6 A;  4Q4T A;  3A2Z A;  2VPM A;  3PBC A;  4FGI A;  3KW0 A;  4FQA A;  4R0K A;  2HBW A;  4CSH A;  2K3A A;  4HZ9 A;  3PBI A;  3EBQ A;  4JXB A;  2XIV A;  4HPE A;  3M1U A;  4HFL A;  4HFF A;  4CGK A;  2VPS A;  4JUR A;  4EQ8 A;  2LRJ A; 
#chains in the Genus database with same CATH homology
 3A2Y A;  4F0V A;  3NE0 A;  2IOA A;  3H41 A;  3A30 A;  4LJ1 A;  3NPF A;  3S0Q A;  3VPI A;  2IO8 A;  4FDY A;  4Q4G X;  4F0W A;  3I86 A;  2EVR A;  4FGD A;  4FGE A;  3PVQ A;  4HZB A;  3O98 A;  4CT3 A;  4OLK A;  4F4M A;  2VOB A;  4FQB A;  3VPJ A;  2K1G A;  4EQA A;  3GT2 A;  2IO9 A;  2IOB A;  4EOB A;  4Q4N A;  2FG0 A;  2IO7 A;  2IF6 A;  4Q4T A;  3A2Z A;  2VPM A;  3PBC A;  4FGI A;  3KW0 A;  4FQA A;  4R0K A;  2HBW A;  4CSH A;  2K3A A;  4HZ9 A;  3PBI A;  4JXB A;  2XIV A;  4HPE A;  3M1U A;  4EQ8 A;  4CGK A;  2VPS A;  2LRJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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