4FQAA

Crystal structure of toxic effector tse1
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
155
structure length
155
Chain Sequence
DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRASLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insight on toxic effector Tse1
rcsb
molecule tags Toxin
source organism Pseudomonas aeruginosa pao1
molecule keywords toxic effector Tse1
total genus 41
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2012-06-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4fqaA00
4LJ1A 3KW0A 2IO7A 4CGKA 2VPMA 3PBCA 3A30A 4EQ8A 4EQAA 4CT3A 3NE0A 4F0VA 3S0QA 2EVRA 4Q4TA 2IO9A 2IOBA 2K1GA 2IF6A 4FGDA 4FQAA 3A2YA 4FGEA 2HBWA 3VPIA 2K3AA 4Q4NA 4F0WA 4FQBA 3VPJA 3H41A 4Q4GX 3M1UA 4R0KA 3PBIA 4HZ9A 3GT2A 3A2ZA 4HZBA 2VPSA 2VOBA 2IO8A 2XIVA 3PVQA 3O98A 4FGIA 2LRJA 4HPEA 4OLKA 4JXBA 2FG0A 3I86A 4CSHA 4EOBA 4FDYA 4F4MA 2IOAA 3NPFA
chains in the Genus database with same CATH superfamily
4LJ1A 3KW0A 4HFLA 2IO7A 4CGKA 2VPMA 4CSHA 3PBCA 3A30A 4HFFA 4EQ8A 4CT3A 4EQAA 2WP7A 3NE0A 4F0VA 3S0QA 2EVRA 4Q4TA 2IO9A 2IOBA 2K1GA 2IF6A 4FGDA 4FQAA 3A2YA 4HFKA 4FGEA 2HBWA 4J30A 3VPIA 2K3AA 4Q4NA 4F0WA 4FQBA 3VPJA 3H41A 4Q4GX 3M1UA 4R0KA 3PBIA 4HZ9A 3GT2A 3A2ZA 4HZBA 4J32A 2VPSA 2VOBA 2IO8A 2XIVA 3PVQA 3O98A 4FGIA 2LRJA 3EBQA 4HPEA 4JXBA 2FG0A 3I86A 4OLKA 4EOBA 4FDYA 4F4MA 2IOAA 4JURA 3NPFA
chains in the Genus database with same CATH topology
4LJ1A 3KW0A 2IO7A 4CGKA 2VPMA 3PBCA 3A30A 4EQ8A 4EQAA 4CT3A 3NE0A 4F0VA 3S0QA 2EVRA 4Q4TA 2IO9A 2IOBA 2K1GA 2IF6A 4FGDA 4FQAA 3A2YA 4FGEA 2HBWA 3VPIA 2K3AA 4Q4NA 4F0WA 4FQBA 3VPJA 3H41A 4Q4GX 3M1UA 4R0KA 3PBIA 4HZ9A 3GT2A 3A2ZA 4HZBA 2VPSA 2VOBA 2IO8A 2XIVA 3PVQA 3O98A 4FGIA 2LRJA 4HPEA 4OLKA 4JXBA 2FG0A 3I86A 4CSHA 4EOBA 4FDYA 4F4MA 2IOAA 3NPFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LJ1 A;  3KW0 A;  2IO7 A;  4CGK A;  2VPM A;  3PBC A;  3A30 A;  4EQ8 A;  4EQA A;  4CT3 A;  3NE0 A;  4F0V A;  3S0Q A;  2EVR A;  4Q4T A;  2IO9 A;  2IOB A;  2K1G A;  2IF6 A;  4FGD A;  4FQA A;  3A2Y A;  4FGE A;  2HBW A;  3VPI A;  2K3A A;  4Q4N A;  4F0W A;  4FQB A;  3VPJ A;  3H41 A;  4Q4G X;  3M1U A;  4R0K A;  3PBI A;  4HZ9 A;  3GT2 A;  3A2Z A;  4HZB A;  2VPS A;  2VOB A;  2IO8 A;  2XIV A;  3PVQ A;  3O98 A;  4FGI A;  2LRJ A;  4HPE A;  4OLK A;  4JXB A;  2FG0 A;  3I86 A;  4CSH A;  4EOB A;  4FDY A;  4F4M A;  2IOA A;  3NPF A; 
#chains in the Genus database with same CATH topology
 4LJ1 A;  3KW0 A;  4HFL A;  2IO7 A;  4CGK A;  2VPM A;  4CSH A;  3PBC A;  3A30 A;  4HFF A;  4EQ8 A;  4CT3 A;  4EQA A;  2WP7 A;  3NE0 A;  4F0V A;  3S0Q A;  2EVR A;  4Q4T A;  2IO9 A;  2IOB A;  2K1G A;  2IF6 A;  4FGD A;  4FQA A;  3A2Y A;  4HFK A;  4FGE A;  2HBW A;  4J30 A;  3VPI A;  2K3A A;  4Q4N A;  4F0W A;  4FQB A;  3VPJ A;  3H41 A;  4Q4G X;  3M1U A;  4R0K A;  3PBI A;  4HZ9 A;  3GT2 A;  3A2Z A;  4HZB A;  4J32 A;  2VPS A;  2VOB A;  2IO8 A;  2XIV A;  3PVQ A;  3O98 A;  4FGI A;  2LRJ A;  3EBQ A;  4HPE A;  4JXB A;  2FG0 A;  3I86 A;  4OLK A;  4EOB A;  4FDY A;  4F4M A;  2IOA A;  4JUR A;  3NPF A; 
#chains in the Genus database with same CATH homology
 4LJ1 A;  3KW0 A;  2IO7 A;  4CGK A;  2VPM A;  3PBC A;  3A30 A;  4EQ8 A;  4EQA A;  4CT3 A;  3NE0 A;  4F0V A;  3S0Q A;  2EVR A;  4Q4T A;  2IO9 A;  2IOB A;  2K1G A;  2IF6 A;  4FGD A;  4FQA A;  3A2Y A;  4FGE A;  2HBW A;  3VPI A;  2K3A A;  4Q4N A;  4F0W A;  4FQB A;  3VPJ A;  3H41 A;  4Q4G X;  3M1U A;  4R0K A;  3PBI A;  4HZ9 A;  3GT2 A;  3A2Z A;  4HZB A;  2VPS A;  2VOB A;  2IO8 A;  2XIV A;  3PVQ A;  3O98 A;  4FGI A;  2LRJ A;  4HPE A;  4OLK A;  4JXB A;  2FG0 A;  3I86 A;  4CSH A;  4EOB A;  4FDY A;  4F4M A;  2IOA A;  3NPF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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