4J30A

Structure of the effector - immunity system tae4 / tai4 from salmonella typhimurium, selenomethionine variant
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
160
structure length
154
Chain Sequence
NRPSFNEAWLAFRKVNHSVADVGSIIGGNVGKNITGGYFQNACPIRMSYVLNATGFPIARNSPYAKVSGADNKFYIYRVNDMIDYLTHTMGKPDLIVNNPKQSDFIGKKGIIVVKGHGWSNARGHVTLWNGSICSDQCHLGPFVPEVGTLWILP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/inhibitor
source organism Salmonella enterica subsp. enterica serovar typhimurium
publication title Structural Insights into the Effector - Immunity System Tae4/Tai4 from Salmonella typhimurium.
pubmed doi rcsb
molecule keywords Putative cytoplasmic protein
total genus 41
structure length 154
sequence length 160
ec nomenclature
pdb deposition date 2013-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14113 Tae4 Type VI secretion system (T6SS), amidase effector protein 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.70 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 4j30A00
4HFFA 4J30A 4HFKA 4J32A 4HFLA 4JURA
chains in the Genus database with same CATH superfamily
2EVRA 3NE0A 3A2ZA 4Q4NA 4EQ8A 4R0KA 4EOBA 3NPFA 2IOBA 4OLKA 2FG0A 4JURA 4LJ1A 2WP7A 3O98A 4JXBA 3H41A 2IO7A 4FQAA 4CSHA 4FQBA 4J32A 2K3AA 4HZBA 4FGEA 4HPEA 2HBWA 4FDYA 4J30A 4CT3A 4EQAA 3A2YA 3EBQA 2IOAA 3A30A 2LRJA 3PBCA 4HFKA 3S0QA 2IF6A 4CGKA 4HFLA 4F0VA 2VPSA 4Q4TA 2VPMA 3VPJA 2VOBA 4HFFA 2IO9A 2XIVA 4FGIA 3PVQA 4FGDA 3GT2A 4HZ9A 2K1GA 3KW0A 3PBIA 3VPIA 4F0WA 2IO8A 3I86A 4F4MA 4Q4GX 3M1UA
chains in the Genus database with same CATH topology
4HFFA 4J30A 3EBQA 4HFKA 4J32A 4HFLA 4JURA 2WP7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFF A;  4J30 A;  4HFK A;  4J32 A;  4HFL A;  4JUR A; 
#chains in the Genus database with same CATH topology
 2EVR A;  3NE0 A;  3A2Z A;  4Q4N A;  4EQ8 A;  4R0K A;  4EOB A;  3NPF A;  2IOB A;  4OLK A;  2FG0 A;  4JUR A;  4LJ1 A;  2WP7 A;  3O98 A;  4JXB A;  3H41 A;  2IO7 A;  4FQA A;  4CSH A;  4FQB A;  4J32 A;  2K3A A;  4HZB A;  4FGE A;  4HPE A;  2HBW A;  4FDY A;  4J30 A;  4CT3 A;  4EQA A;  3A2Y A;  3EBQ A;  2IOA A;  3A30 A;  2LRJ A;  3PBC A;  4HFK A;  3S0Q A;  2IF6 A;  4CGK A;  4HFL A;  4F0V A;  2VPS A;  4Q4T A;  2VPM A;  3VPJ A;  2VOB A;  4HFF A;  2IO9 A;  2XIV A;  4FGI A;  3PVQ A;  4FGD A;  3GT2 A;  4HZ9 A;  2K1G A;  3KW0 A;  3PBI A;  3VPI A;  4F0W A;  2IO8 A;  3I86 A;  4F4M A;  4Q4G X;  3M1U A; 
#chains in the Genus database with same CATH homology
 4HFF A;  4J30 A;  3EBQ A;  4HFK A;  4J32 A;  4HFL A;  4JUR A;  2WP7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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