4J32A

Structure of the effector - immunity system tae4 / tai4 from salmonella typhimurium
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
160
structure length
157
Chain Sequence
NRPSFNEAWLAFRKVNHSVADVGSIIGGNVGKNITGGYFQNACPIRMSYVLNATGFPIARNSPYAKVSGADNKFYIYRVNDMIDYLTHTMGKPDLIVNNPKQSDFIGKKGIIVVKGHGWSNARGHVTLWNGSICSDQCHLLNNGPFVPEVGTLWILP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into the Effector - Immunity System Tae4/Tai4 from Salmonella typhimurium.
pubmed doi rcsb
molecule tags Toxin/inhibitor
source organism Salmonella enterica subsp. enterica serovar typhimurium
molecule keywords Putative cytoplasmic protein
total genus 48
structure length 157
sequence length 160
ec nomenclature
pdb deposition date 2013-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14113 Tae4 Type VI secretion system (T6SS), amidase effector protein 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.70 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 4j32A00
4HFKA 4HFLA 4J30A 4JURA 4HFFA 4J32A
chains in the Genus database with same CATH superfamily
3VPIA 4HFKA 2XIVA 4HFLA 4Q4GX 4CT3A 4FQAA 4HFFA 2IO9A 2IOBA 2K3AA 2FG0A 3H41A 4R0KA 3GT2A 4CSHA 3KW0A 4FQBA 3A2YA 4HZ9A 4CGKA 2K1GA 3M1UA 2IO7A 4J30A 4Q4NA 4EOBA 4EQ8A 2IOAA 4HPEA 3PBIA 3S0QA 3NE0A 2VPMA 2VPSA 3NPFA 2WP7A 4FGDA 4J32A 3PVQA 2VOBA 4LJ1A 4FGEA 4EQAA 4HZBA 3A2ZA 4F4MA 2IO8A 4Q4TA 3A30A 2IF6A 4FGIA 3I86A 4FDYA 4JXBA 4JURA 4OLKA 3VPJA 3PBCA 2HBWA 4F0VA 2EVRA 4F0WA 3O98A 3EBQA 2LRJA
chains in the Genus database with same CATH topology
4HFKA 4HFLA 4J30A 4JURA 4HFFA 4J32A 2WP7A 3EBQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFK A;  4HFL A;  4J30 A;  4JUR A;  4HFF A;  4J32 A; 
#chains in the Genus database with same CATH topology
 3VPI A;  4HFK A;  2XIV A;  4HFL A;  4Q4G X;  4CT3 A;  4FQA A;  4HFF A;  2IO9 A;  2IOB A;  2K3A A;  2FG0 A;  3H41 A;  4R0K A;  3GT2 A;  4CSH A;  3KW0 A;  4FQB A;  3A2Y A;  4HZ9 A;  4CGK A;  2K1G A;  3M1U A;  2IO7 A;  4J30 A;  4Q4N A;  4EOB A;  4EQ8 A;  2IOA A;  4HPE A;  3PBI A;  3S0Q A;  3NE0 A;  2VPM A;  2VPS A;  3NPF A;  2WP7 A;  4FGD A;  4J32 A;  3PVQ A;  2VOB A;  4LJ1 A;  4FGE A;  4EQA A;  4HZB A;  3A2Z A;  4F4M A;  2IO8 A;  4Q4T A;  3A30 A;  2IF6 A;  4FGI A;  3I86 A;  4FDY A;  4JXB A;  4JUR A;  4OLK A;  3VPJ A;  3PBC A;  2HBW A;  4F0V A;  2EVR A;  4F0W A;  3O98 A;  3EBQ A;  2LRJ A; 
#chains in the Genus database with same CATH homology
 4HFK A;  4HFL A;  4J30 A;  4JUR A;  4HFF A;  4J32 A;  2WP7 A;  3EBQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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