4JURA

Crystal structure of the effector tae4 from salmonella typhimurium in complex with the immunity tai4 from enterobacter cloacae
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
161
structure length
161
Chain Sequence
MNRPSFNEAWLAFRKVNHSVADVGSIIGGNVGKNITGGYFQNACPIRMSYVLNATGFPIARNSPYAKVSGADNKFYIYRVNDMIDYLTHTMGKPDLIVNNPKQSDFIGKKGIIVVKGHGWSNARGHVTLWNGSICSDQCHLLNDPDNGPFVPEVGTLWILP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Insights into the cross-immunity mechanism within effector families of bacteria type VI secretion system from the structure of StTae4-EcTai4 complex
pubmed doi rcsb
molecule tags Hydrolase
source organism Salmonella typhimurium
molecule keywords Putative cytoplasmic protein
total genus 36
structure length 161
sequence length 161
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14113 Tae4 Type VI secretion system (T6SS), amidase effector protein 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.70 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase fold (from Nostoc punctiforme) 4jurA00
4HFLA 4J30A 4JURA 4HFFA 4HFKA 4J32A
chains in the Genus database with same CATH superfamily
3PBCA 4FGDA 4OLKA 3O98A 4F0WA 3A30A 4LJ1A 4CT3A 2HBWA 4Q4TA 2VPSA 2IO7A 4FDYA 2IO8A 3EBQA 2WP7A 2LRJA 3NE0A 2IOAA 3M1UA 4HFKA 4F4MA 2FG0A 3PVQA 2IF6A 2IO9A 3GT2A 3H41A 4JURA 4Q4NA 3VPIA 4J32A 3PBIA 3KW0A 4EOBA 4FQAA 4FQBA 4JXBA 2VPMA 2VOBA 3NPFA 3S0QA 4Q4GX 4EQ8A 2XIVA 2K3AA 4HFLA 3I86A 2IOBA 4J30A 4HFFA 4R0KA 4HZBA 4F0VA 4CGKA 3A2YA 4FGIA 4HZ9A 4FGEA 2EVRA 4CSHA 2K1GA 3VPJA 4EQAA 4HPEA 3A2ZA
chains in the Genus database with same CATH topology
4HFLA 4J30A 4JURA 4HFFA 3EBQA 2WP7A 4HFKA 4J32A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFL A;  4J30 A;  4JUR A;  4HFF A;  4HFK A;  4J32 A; 
#chains in the Genus database with same CATH topology
 3PBC A;  4FGD A;  4OLK A;  3O98 A;  4F0W A;  3A30 A;  4LJ1 A;  4CT3 A;  2HBW A;  4Q4T A;  2VPS A;  2IO7 A;  4FDY A;  2IO8 A;  3EBQ A;  2WP7 A;  2LRJ A;  3NE0 A;  2IOA A;  3M1U A;  4HFK A;  4F4M A;  2FG0 A;  3PVQ A;  2IF6 A;  2IO9 A;  3GT2 A;  3H41 A;  4JUR A;  4Q4N A;  3VPI A;  4J32 A;  3PBI A;  3KW0 A;  4EOB A;  4FQA A;  4FQB A;  4JXB A;  2VPM A;  2VOB A;  3NPF A;  3S0Q A;  4Q4G X;  4EQ8 A;  2XIV A;  2K3A A;  4HFL A;  3I86 A;  2IOB A;  4J30 A;  4HFF A;  4R0K A;  4HZB A;  4F0V A;  4CGK A;  3A2Y A;  4FGI A;  4HZ9 A;  4FGE A;  2EVR A;  4CSH A;  2K1G A;  3VPJ A;  4EQA A;  4HPE A;  3A2Z A; 
#chains in the Genus database with same CATH homology
 4HFL A;  4J30 A;  4JUR A;  4HFF A;  3EBQ A;  2WP7 A;  4HFK A;  4J32 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...