4OLKA

The chap domain of lysgh15
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
164
structure length
164
Chain Sequence
MAKTQAEINKRLDAYAKGTVDSPYRIKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYQQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Characterization Reveals LysGH15 as an Unprecedented "EF-Hand-Like" Calcium-Binding Phage Lysin
doi rcsb
molecule tags Hydrolase
source organism Staphylococcus phage gh15
molecule keywords Endolysin
total genus 45
structure length 164
sequence length 164
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4olkA00
2HBWA 4FDYA 4Q4GX 3A30A 2IF6A 4EOBA 2VPSA 3GT2A 4F4MA 4HZ9A 4JXBA 2LRJA 4CGKA 4EQAA 3PBIA 2IO8A 3O98A 4FQBA 4F0WA 2VOBA 2IOBA 2VPMA 4FGEA 3VPIA 2K1GA 3H41A 2IOAA 4R0KA 4LJ1A 3KW0A 3A2YA 3PBCA 3VPJA 4FGIA 4FGDA 2FG0A 4OLKA 4F0VA 2IO9A 4HPEA 4HZBA 2EVRA 4FQAA 3M1UA 3S0QA 4CSHA 3NPFA 3A2ZA 4Q4TA 2XIVA 4EQ8A 2IO7A 4Q4NA 2K3AA 4CT3A 3NE0A 3I86A 3PVQA
chains in the Genus database with same CATH superfamily
2HBWA 4FDYA 4JURA 4Q4GX 3A30A 2IF6A 4EOBA 2VPSA 3GT2A 4HFLA 4F4MA 4HZ9A 4JXBA 2LRJA 4CGKA 4EQAA 3PBIA 2IO8A 3O98A 4FQBA 4F0WA 2VOBA 2IOBA 2VPMA 4HFKA 4FGEA 3VPIA 2K1GA 3H41A 2IOAA 2WP7A 4R0KA 4LJ1A 3KW0A 3A2YA 3PBCA 3VPJA 4FGIA 4FGDA 2FG0A 4J32A 4OLKA 4F0VA 2IO9A 4HPEA 4HFFA 4HZBA 2EVRA 4FQAA 3M1UA 3S0QA 4CSHA 3NPFA 3A2ZA 3EBQA 4Q4TA 2XIVA 4EQ8A 2IO7A 4J30A 4Q4NA 2K3AA 4CT3A 3NE0A 3I86A 3PVQA
chains in the Genus database with same CATH topology
2HBWA 4FDYA 4Q4GX 3A30A 2IF6A 4EOBA 2VPSA 3GT2A 4F4MA 4HZ9A 4JXBA 2LRJA 4CGKA 4EQAA 3PBIA 2IO8A 3O98A 4FQBA 4F0WA 2VOBA 2IOBA 2VPMA 4FGEA 3VPIA 2K1GA 3H41A 2IOAA 4R0KA 4LJ1A 3KW0A 3A2YA 3PBCA 3VPJA 4FGIA 4FGDA 2FG0A 4OLKA 4F0VA 2IO9A 4HPEA 4HZBA 2EVRA 4FQAA 3M1UA 3S0QA 4CSHA 3NPFA 3A2ZA 4Q4TA 2XIVA 4EQ8A 2IO7A 4Q4NA 2K3AA 4CT3A 3NE0A 3I86A 3PVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HBW A;  4FDY A;  4Q4G X;  3A30 A;  2IF6 A;  4EOB A;  2VPS A;  3GT2 A;  4F4M A;  4HZ9 A;  4JXB A;  2LRJ A;  4CGK A;  4EQA A;  3PBI A;  2IO8 A;  3O98 A;  4FQB A;  4F0W A;  2VOB A;  2IOB A;  2VPM A;  4FGE A;  3VPI A;  2K1G A;  3H41 A;  2IOA A;  4R0K A;  4LJ1 A;  3KW0 A;  3A2Y A;  3PBC A;  3VPJ A;  4FGI A;  4FGD A;  2FG0 A;  4OLK A;  4F0V A;  2IO9 A;  4HPE A;  4HZB A;  2EVR A;  4FQA A;  3M1U A;  3S0Q A;  4CSH A;  3NPF A;  3A2Z A;  4Q4T A;  2XIV A;  4EQ8 A;  2IO7 A;  4Q4N A;  2K3A A;  4CT3 A;  3NE0 A;  3I86 A;  3PVQ A; 
#chains in the Genus database with same CATH topology
 2HBW A;  4FDY A;  4JUR A;  4Q4G X;  3A30 A;  2IF6 A;  4EOB A;  2VPS A;  3GT2 A;  4HFL A;  4F4M A;  4HZ9 A;  4JXB A;  2LRJ A;  4CGK A;  4EQA A;  3PBI A;  2IO8 A;  3O98 A;  4FQB A;  4F0W A;  2VOB A;  2IOB A;  2VPM A;  4HFK A;  4FGE A;  3VPI A;  2K1G A;  3H41 A;  2IOA A;  2WP7 A;  4R0K A;  4LJ1 A;  3KW0 A;  3A2Y A;  3PBC A;  3VPJ A;  4FGI A;  4FGD A;  2FG0 A;  4J32 A;  4OLK A;  4F0V A;  2IO9 A;  4HPE A;  4HFF A;  4HZB A;  2EVR A;  4FQA A;  3M1U A;  3S0Q A;  4CSH A;  3NPF A;  3A2Z A;  3EBQ A;  4Q4T A;  2XIV A;  4EQ8 A;  2IO7 A;  4J30 A;  4Q4N A;  2K3A A;  4CT3 A;  3NE0 A;  3I86 A;  3PVQ A; 
#chains in the Genus database with same CATH homology
 2HBW A;  4FDY A;  4Q4G X;  3A30 A;  2IF6 A;  4EOB A;  2VPS A;  3GT2 A;  4F4M A;  4HZ9 A;  4JXB A;  2LRJ A;  4CGK A;  4EQA A;  3PBI A;  2IO8 A;  3O98 A;  4FQB A;  4F0W A;  2VOB A;  2IOB A;  2VPM A;  4FGE A;  3VPI A;  2K1G A;  3H41 A;  2IOA A;  4R0K A;  4LJ1 A;  3KW0 A;  3A2Y A;  3PBC A;  3VPJ A;  4FGI A;  4FGD A;  2FG0 A;  4OLK A;  4F0V A;  2IO9 A;  4HPE A;  4HZB A;  2EVR A;  4FQA A;  3M1U A;  3S0Q A;  4CSH A;  3NPF A;  3A2Z A;  4Q4T A;  2XIV A;  4EQ8 A;  2IO7 A;  4Q4N A;  2K3A A;  4CT3 A;  3NE0 A;  3I86 A;  3PVQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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