4Q4NA

Structure of the resuscitation promoting factor interacting protein ripa mutated at h432
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
208
structure length
208
Chain Sequence
GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQAVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Peptidoglycan endopeptidase RipA
total genus 59
structure length 208
sequence length 208
ec nomenclature ec 3.4.-.-:
pdb deposition date 2014-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4q4nA00
2HBWA 3KW0A 2VPSA 3A2YA 3O98A 3A30A 3S0QA 2LRJA 4R0KA 2K3AA 4FGEA 2IOAA 4FGIA 3PBCA 2VOBA 2IO7A 2IF6A 2IO8A 4CGKA 3A2ZA 2IOBA 4EOBA 2K1GA 4HPEA 2FG0A 2XIVA 4HZ9A 4EQAA 4FQBA 4HZBA 4F0WA 3M1UA 3I86A 4F4MA 4Q4NA 4JXBA 3GT2A 3H41A 4OLKA 3NE0A 4CSHA 4CT3A 3NPFA 2EVRA 4FDYA 3VPJA 2IO9A 4FQAA 4EQ8A 4FGDA 4LJ1A 4Q4TA 3PBIA 2VPMA 3PVQA 3VPIA 4F0VA 4Q4GX
chains in the Genus database with same CATH superfamily
2HBWA 3KW0A 2VPSA 3A2YA 2WP7A 3A30A 3O98A 2LRJA 4R0KA 3S0QA 4HFFA 2K3AA 4FGEA 4J30A 2IOAA 4FGIA 3PBCA 2VOBA 2IO7A 2IF6A 2IO8A 4CGKA 3A2ZA 2IOBA 4EOBA 2K1GA 4HFLA 4HPEA 2FG0A 2XIVA 4HZ9A 4EQAA 4FQBA 4HZBA 4F0WA 4HFKA 3M1UA 3I86A 4J32A 4F4MA 4Q4NA 4JXBA 3GT2A 3H41A 4OLKA 3NE0A 4CSHA 4CT3A 3NPFA 4JURA 2EVRA 4FDYA 3VPJA 2IO9A 4FQAA 4EQ8A 4FGDA 4LJ1A 4Q4TA 3PBIA 2VPMA 3PVQA 3VPIA 4F0VA 4Q4GX 3EBQA
chains in the Genus database with same CATH topology
2HBWA 3KW0A 2VPSA 3A2YA 3O98A 3A30A 3S0QA 2LRJA 4R0KA 2K3AA 4FGEA 2IOAA 4FGIA 3PBCA 2VOBA 2IO7A 2IF6A 2IO8A 4CGKA 3A2ZA 2IOBA 4EOBA 2K1GA 4HPEA 2FG0A 2XIVA 4HZ9A 4EQAA 4FQBA 4HZBA 4F0WA 3M1UA 3I86A 4F4MA 4Q4NA 4JXBA 3GT2A 3H41A 4OLKA 3NE0A 4CSHA 4CT3A 3NPFA 2EVRA 4FDYA 3VPJA 2IO9A 4FQAA 4EQ8A 4FGDA 4LJ1A 4Q4TA 3PBIA 2VPMA 3PVQA 3VPIA 4F0VA 4Q4GX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HBW A;  3KW0 A;  2VPS A;  3A2Y A;  3O98 A;  3A30 A;  3S0Q A;  2LRJ A;  4R0K A;  2K3A A;  4FGE A;  2IOA A;  4FGI A;  3PBC A;  2VOB A;  2IO7 A;  2IF6 A;  2IO8 A;  4CGK A;  3A2Z A;  2IOB A;  4EOB A;  2K1G A;  4HPE A;  2FG0 A;  2XIV A;  4HZ9 A;  4EQA A;  4FQB A;  4HZB A;  4F0W A;  3M1U A;  3I86 A;  4F4M A;  4Q4N A;  4JXB A;  3GT2 A;  3H41 A;  4OLK A;  3NE0 A;  4CSH A;  4CT3 A;  3NPF A;  2EVR A;  4FDY A;  3VPJ A;  2IO9 A;  4FQA A;  4EQ8 A;  4FGD A;  4LJ1 A;  4Q4T A;  3PBI A;  2VPM A;  3PVQ A;  3VPI A;  4F0V A;  4Q4G X; 
#chains in the Genus database with same CATH topology
 2HBW A;  3KW0 A;  2VPS A;  3A2Y A;  2WP7 A;  3A30 A;  3O98 A;  2LRJ A;  4R0K A;  3S0Q A;  4HFF A;  2K3A A;  4FGE A;  4J30 A;  2IOA A;  4FGI A;  3PBC A;  2VOB A;  2IO7 A;  2IF6 A;  2IO8 A;  4CGK A;  3A2Z A;  2IOB A;  4EOB A;  2K1G A;  4HFL A;  4HPE A;  2FG0 A;  2XIV A;  4HZ9 A;  4EQA A;  4FQB A;  4HZB A;  4F0W A;  4HFK A;  3M1U A;  3I86 A;  4J32 A;  4F4M A;  4Q4N A;  4JXB A;  3GT2 A;  3H41 A;  4OLK A;  3NE0 A;  4CSH A;  4CT3 A;  3NPF A;  4JUR A;  2EVR A;  4FDY A;  3VPJ A;  2IO9 A;  4FQA A;  4EQ8 A;  4FGD A;  4LJ1 A;  4Q4T A;  3PBI A;  2VPM A;  3PVQ A;  3VPI A;  4F0V A;  4Q4G X;  3EBQ A; 
#chains in the Genus database with same CATH homology
 2HBW A;  3KW0 A;  2VPS A;  3A2Y A;  3O98 A;  3A30 A;  3S0Q A;  2LRJ A;  4R0K A;  2K3A A;  4FGE A;  2IOA A;  4FGI A;  3PBC A;  2VOB A;  2IO7 A;  2IF6 A;  2IO8 A;  4CGK A;  3A2Z A;  2IOB A;  4EOB A;  2K1G A;  4HPE A;  2FG0 A;  2XIV A;  4HZ9 A;  4EQA A;  4FQB A;  4HZB A;  4F0W A;  3M1U A;  3I86 A;  4F4M A;  4Q4N A;  4JXB A;  3GT2 A;  3H41 A;  4OLK A;  3NE0 A;  4CSH A;  4CT3 A;  3NPF A;  2EVR A;  4FDY A;  3VPJ A;  2IO9 A;  4FQA A;  4EQ8 A;  4FGD A;  4LJ1 A;  4Q4T A;  3PBI A;  2VPM A;  3PVQ A;  3VPI A;  4F0V A;  4Q4G X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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