4Q4NA

Structure of the resuscitation promoting factor interacting protein ripa mutated at h432
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
208
structure length
208
Chain Sequence
GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQAVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Peptidoglycan endopeptidase RipA
total genus 59
structure length 208
sequence length 208
ec nomenclature ec 3.4.-.-:
pdb deposition date 2014-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00877 NLPC_P60 NlpC/P60 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4q4nA00
2VOBA 4EQ8A 2IO9A 2EVRA 3S0QA 4FGDA 4FGIA 2IO8A 2FG0A 2VPSA 2VPMA 4FQBA 3PVQA 3NE0A 4JXBA 3KW0A 4LJ1A 4EOBA 4CSHA 3A30A 2IO7A 4HZBA 3PBCA 4FDYA 4HPEA 3A2YA 4Q4GX 3VPIA 3A2ZA 4CT3A 3I86A 2K1GA 3PBIA 2LRJA 4Q4TA 4F4MA 4FQAA 2HBWA 2IOBA 4F0VA 3O98A 4Q4NA 3M1UA 4EQAA 2IF6A 3NPFA 4HZ9A 4OLKA 4FGEA 4F0WA 2K3AA 3H41A 4CGKA 4R0KA 2XIVA 2IOAA 3GT2A 3VPJA
chains in the Genus database with same CATH superfamily
2VOBA 4HFFA 4EQ8A 2IO9A 2EVRA 3S0QA 4FGDA 4FGIA 2IO8A 2FG0A 2VPSA 2VPMA 4FQBA 3PVQA 3NE0A 4JXBA 3KW0A 4JURA 4HFKA 4LJ1A 4EOBA 4CSHA 3A30A 2IO7A 4HZBA 3PBCA 4FDYA 4HPEA 3A2YA 4Q4GX 3VPIA 3A2ZA 4CT3A 3I86A 2K1GA 3PBIA 2LRJA 4J30A 4Q4TA 4F4MA 2WP7A 4FQAA 2HBWA 2IOBA 4F0VA 3O98A 4Q4NA 3M1UA 4EQAA 4J32A 2IF6A 3EBQA 3NPFA 4HZ9A 4OLKA 4FGEA 4F0WA 2K3AA 4HFLA 3H41A 4CGKA 4R0KA 2XIVA 2IOAA 3GT2A 3VPJA
chains in the Genus database with same CATH topology
2VOBA 4EQ8A 2IO9A 2EVRA 3S0QA 4FGDA 4FGIA 2IO8A 2FG0A 2VPSA 2VPMA 4FQBA 3PVQA 3NE0A 4JXBA 3KW0A 4LJ1A 4EOBA 4CSHA 3A30A 2IO7A 4HZBA 3PBCA 4FDYA 4HPEA 3A2YA 4Q4GX 3VPIA 3A2ZA 4CT3A 3I86A 2K1GA 3PBIA 2LRJA 4Q4TA 4F4MA 4FQAA 2HBWA 2IOBA 4F0VA 3O98A 4Q4NA 3M1UA 4EQAA 2IF6A 3NPFA 4HZ9A 4OLKA 4FGEA 4F0WA 2K3AA 3H41A 4CGKA 4R0KA 2XIVA 2IOAA 3GT2A 3VPJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VOB A;  4EQ8 A;  2IO9 A;  2EVR A;  3S0Q A;  4FGD A;  4FGI A;  2IO8 A;  2FG0 A;  2VPS A;  2VPM A;  4FQB A;  3PVQ A;  3NE0 A;  4JXB A;  3KW0 A;  4LJ1 A;  4EOB A;  4CSH A;  3A30 A;  2IO7 A;  4HZB A;  3PBC A;  4FDY A;  4HPE A;  3A2Y A;  4Q4G X;  3VPI A;  3A2Z A;  4CT3 A;  3I86 A;  2K1G A;  3PBI A;  2LRJ A;  4Q4T A;  4F4M A;  4FQA A;  2HBW A;  2IOB A;  4F0V A;  3O98 A;  4Q4N A;  3M1U A;  4EQA A;  2IF6 A;  3NPF A;  4HZ9 A;  4OLK A;  4FGE A;  4F0W A;  2K3A A;  3H41 A;  4CGK A;  4R0K A;  2XIV A;  2IOA A;  3GT2 A;  3VPJ A; 
#chains in the Genus database with same CATH topology
 2VOB A;  4HFF A;  4EQ8 A;  2IO9 A;  2EVR A;  3S0Q A;  4FGD A;  4FGI A;  2IO8 A;  2FG0 A;  2VPS A;  2VPM A;  4FQB A;  3PVQ A;  3NE0 A;  4JXB A;  3KW0 A;  4JUR A;  4HFK A;  4LJ1 A;  4EOB A;  4CSH A;  3A30 A;  2IO7 A;  4HZB A;  3PBC A;  4FDY A;  4HPE A;  3A2Y A;  4Q4G X;  3VPI A;  3A2Z A;  4CT3 A;  3I86 A;  2K1G A;  3PBI A;  2LRJ A;  4J30 A;  4Q4T A;  4F4M A;  2WP7 A;  4FQA A;  2HBW A;  2IOB A;  4F0V A;  3O98 A;  4Q4N A;  3M1U A;  4EQA A;  4J32 A;  2IF6 A;  3EBQ A;  3NPF A;  4HZ9 A;  4OLK A;  4FGE A;  4F0W A;  2K3A A;  4HFL A;  3H41 A;  4CGK A;  4R0K A;  2XIV A;  2IOA A;  3GT2 A;  3VPJ A; 
#chains in the Genus database with same CATH homology
 2VOB A;  4EQ8 A;  2IO9 A;  2EVR A;  3S0Q A;  4FGD A;  4FGI A;  2IO8 A;  2FG0 A;  2VPS A;  2VPM A;  4FQB A;  3PVQ A;  3NE0 A;  4JXB A;  3KW0 A;  4LJ1 A;  4EOB A;  4CSH A;  3A30 A;  2IO7 A;  4HZB A;  3PBC A;  4FDY A;  4HPE A;  3A2Y A;  4Q4G X;  3VPI A;  3A2Z A;  4CT3 A;  3I86 A;  2K1G A;  3PBI A;  2LRJ A;  4Q4T A;  4F4M A;  4FQA A;  2HBW A;  2IOB A;  4F0V A;  3O98 A;  4Q4N A;  3M1U A;  4EQA A;  2IF6 A;  3NPF A;  4HZ9 A;  4OLK A;  4FGE A;  4F0W A;  2K3A A;  3H41 A;  4CGK A;  4R0K A;  2XIV A;  2IOA A;  3GT2 A;  3VPJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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