4QOPA

Structure of bacillus pumilus catalase with hydroquinone bound.
Total Genus 151
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Bacillus pumilus
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
molecule keywords Catalase
total genus 151
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qopA00
3TTVA 3TTTA 3VU3A 4AUNA 1P7ZA 3P9SA 2XF2A 4ENSA 1MQFA 4BFLA 1H7KA 1M85A 1H6NA 4BIMA 2IUFA 2IQFA 4B5KA 4AUMA 1CF9A 1GWHA 2J2MA 4QORA 2CAGA 1M7SA 3PQ8A 1GGJA 1GGHA 3TTXA 3PQ6A 3P9PA 4QOLA 4ENQA 4ENWA 4QOQA 1QWSA 3HB6A 4ENVA 1GWFA 3PQ3A 3EJ6A 1SI8A 2CAHA 3ZJ5A 4B40A 4ENPA 3DY5A 1GGEA 4B2YA 1IPHA 1GGKA 4ENRA 1HBZA 3ZJ4A 3PQ4A 4QOOA 4QONA 3PQ7A 4ENUA 1E93A 1P81A 4AJ9A 1GG9A 1P80A 1A4EA 3P9QA 4B7AA 4AULA 4ENTA 3P9RA 4QOMA 3PQ2A 4CABA 2XQ1A 1U5UA 1NM0A 5BV2P 2ISAA 3PQ5A 1GGFA 1SY7A 1QWMA 4QOPA 1QF7A 1GWEA 3TTWA 4AUEA 4E37A 3TTUA 1F4JA 1QWLA 4B31A 1P7YA 2A9EA
chains in the Genus database with same CATH superfamily
5GKNA 3TTVA 1QQWA 4B7FA 3TTTA 3VU3A 4AUNA 1P7ZA 3P9SA 3E4YA 2XF2A 4ENSA 1MQFA 4BFLA 1H7KA 1M85A 3NWLA 1H6NA 4BIMA 2IUFA 1DGFA 2IQFA 1DGGA 4B5KA 4AUMA 1CF9A 1GWHA 2J2MA 4QORA 2CAGA 1M7SA 3PQ8A 1TH4A 1GGJA 1GGHA 3RGPA 3TTXA 3PQ6A 3P9PA 4QOLA 4ENQA 4ENWA 4QOQA 1QWSA 3HB6A 4ENVA 1GWFA 3PQ3A 3EJ6A 1SI8A 1DGBA 2CAHA 1TH2A 3RE8A 3ZJ5A 4B40A 3E4WA 4ENPA 3DY5A 1GGEA 4B2YA 1IPHA 1GGKA 4ENRA 1HBZA 3ZJ4A 3PQ4A 4QOOA 4QONA 3PQ7A 4ENUA 1E93A 1P81A 4AJ9A 1GG9A 1P80A 1A4EA 3P9QA 7CATA 4B7AA 4AULA 4ENTA 3P9RA 3J7BA 4QOMA 3PQ2A 4CABA 2XQ1A 1DGHA 4B7GA 1U5UA 1NM0A 5BV2P 2ISAA 3PQ5A 1GGFA 3RGSA 1SY7A 1QWMA 4QOPA 1DGHB 8CATA 4B7HA 1QF7A 1GWEA 3TTWA 4AUEA 4BLCA 4E37A 1TH3A 1TGUA 3TTUA 1F4JA 1QWLA 4B31A 1P7YA 2A9EA
chains in the Genus database with same CATH topology
3TTVA 3TTTA 3VU3A 4AUNA 1P7ZA 3P9SA 2XF2A 4ENSA 1MQFA 4BFLA 1H7KA 1M85A 1H6NA 4BIMA 2IUFA 2IQFA 4B5KA 4AUMA 1CF9A 1GWHA 2J2MA 4QORA 2CAGA 1M7SA 3PQ8A 1GGJA 1GGHA 3TTXA 3PQ6A 3P9PA 4QOLA 4ENQA 4ENWA 4QOQA 1QWSA 3HB6A 4ENVA 1GWFA 3PQ3A 3EJ6A 1SI8A 2CAHA 3ZJ5A 4B40A 4ENPA 3DY5A 1GGEA 4B2YA 1IPHA 1GGKA 4ENRA 1HBZA 3ZJ4A 3PQ4A 4QOOA 4QONA 3PQ7A 4ENUA 1E93A 1P81A 4AJ9A 1GG9A 1P80A 1A4EA 3P9QA 4B7AA 4AULA 4ENTA 3P9RA 4QOMA 3PQ2A 4CABA 2XQ1A 1U5UA 1NM0A 5BV2P 2ISAA 3PQ5A 1GGFA 1SY7A 1QWMA 4QOPA 1QF7A 1GWEA 3TTWA 4AUEA 4E37A 3TTUA 1F4JA 1QWLA 4B31A 1P7YA 2A9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TTV A;  3TTT A;  3VU3 A;  4AUN A;  1P7Z A;  3P9S A;  2XF2 A;  4ENS A;  1MQF A;  4BFL A;  1H7K A;  1M85 A;  1H6N A;  4BIM A;  2IUF A;  2IQF A;  4B5K A;  4AUM A;  1CF9 A;  1GWH A;  2J2M A;  4QOR A;  2CAG A;  1M7S A;  3PQ8 A;  1GGJ A;  1GGH A;  3TTX A;  3PQ6 A;  3P9P A;  4QOL A;  4ENQ A;  4ENW A;  4QOQ A;  1QWS A;  3HB6 A;  4ENV A;  1GWF A;  3PQ3 A;  3EJ6 A;  1SI8 A;  2CAH A;  3ZJ5 A;  4B40 A;  4ENP A;  3DY5 A;  1GGE A;  4B2Y A;  1IPH A;  1GGK A;  4ENR A;  1HBZ A;  3ZJ4 A;  3PQ4 A;  4QOO A;  4QON A;  3PQ7 A;  4ENU A;  1E93 A;  1P81 A;  4AJ9 A;  1GG9 A;  1P80 A;  1A4E A;  3P9Q A;  4B7A A;  4AUL A;  4ENT A;  3P9R A;  4QOM A;  3PQ2 A;  4CAB A;  2XQ1 A;  1U5U A;  1NM0 A;  5BV2 P;  2ISA A;  3PQ5 A;  1GGF A;  1SY7 A;  1QWM A;  4QOP A;  1QF7 A;  1GWE A;  3TTW A;  4AUE A;  4E37 A;  3TTU A;  1F4J A;  1QWL A;  4B31 A;  1P7Y A;  2A9E A; 
#chains in the Genus database with same CATH topology
 5GKN A;  3TTV A;  1QQW A;  4B7F A;  3TTT A;  3VU3 A;  4AUN A;  1P7Z A;  3P9S A;  3E4Y A;  2XF2 A;  4ENS A;  1MQF A;  4BFL A;  1H7K A;  1M85 A;  3NWL A;  1H6N A;  4BIM A;  2IUF A;  1DGF A;  2IQF A;  1DGG A;  4B5K A;  4AUM A;  1CF9 A;  1GWH A;  2J2M A;  4QOR A;  2CAG A;  1M7S A;  3PQ8 A;  1TH4 A;  1GGJ A;  1GGH A;  3RGP A;  3TTX A;  3PQ6 A;  3P9P A;  4QOL A;  4ENQ A;  4ENW A;  4QOQ A;  1QWS A;  3HB6 A;  4ENV A;  1GWF A;  3PQ3 A;  3EJ6 A;  1SI8 A;  1DGB A;  2CAH A;  1TH2 A;  3RE8 A;  3ZJ5 A;  4B40 A;  3E4W A;  4ENP A;  3DY5 A;  1GGE A;  4B2Y A;  1IPH A;  1GGK A;  4ENR A;  1HBZ A;  3ZJ4 A;  3PQ4 A;  4QOO A;  4QON A;  3PQ7 A;  4ENU A;  1E93 A;  1P81 A;  4AJ9 A;  1GG9 A;  1P80 A;  1A4E A;  3P9Q A;  7CAT A;  4B7A A;  4AUL A;  4ENT A;  3P9R A;  3J7B A;  4QOM A;  3PQ2 A;  4CAB A;  2XQ1 A;  1DGH A;  4B7G A;  1U5U A;  1NM0 A;  5BV2 P;  2ISA A;  3PQ5 A;  1GGF A;  3RGS A;  1SY7 A;  1QWM A;  4QOP A;  1DGH B;  8CAT A;  4B7H A;  1QF7 A;  1GWE A;  3TTW A;  4AUE A;  4BLC A;  4E37 A;  1TH3 A;  1TGU A;  3TTU A;  1F4J A;  1QWL A;  4B31 A;  1P7Y A;  2A9E A; 
#chains in the Genus database with same CATH homology
 3TTV A;  3TTT A;  3VU3 A;  4AUN A;  1P7Z A;  3P9S A;  2XF2 A;  4ENS A;  1MQF A;  4BFL A;  1H7K A;  1M85 A;  1H6N A;  4BIM A;  2IUF A;  2IQF A;  4B5K A;  4AUM A;  1CF9 A;  1GWH A;  2J2M A;  4QOR A;  2CAG A;  1M7S A;  3PQ8 A;  1GGJ A;  1GGH A;  3TTX A;  3PQ6 A;  3P9P A;  4QOL A;  4ENQ A;  4ENW A;  4QOQ A;  1QWS A;  3HB6 A;  4ENV A;  1GWF A;  3PQ3 A;  3EJ6 A;  1SI8 A;  2CAH A;  3ZJ5 A;  4B40 A;  4ENP A;  3DY5 A;  1GGE A;  4B2Y A;  1IPH A;  1GGK A;  4ENR A;  1HBZ A;  3ZJ4 A;  3PQ4 A;  4QOO A;  4QON A;  3PQ7 A;  4ENU A;  1E93 A;  1P81 A;  4AJ9 A;  1GG9 A;  1P80 A;  1A4E A;  3P9Q A;  4B7A A;  4AUL A;  4ENT A;  3P9R A;  4QOM A;  3PQ2 A;  4CAB A;  2XQ1 A;  1U5U A;  1NM0 A;  5BV2 P;  2ISA A;  3PQ5 A;  1GGF A;  1SY7 A;  1QWM A;  4QOP A;  1QF7 A;  1GWE A;  3TTW A;  4AUE A;  4E37 A;  3TTU A;  1F4J A;  1QWL A;  4B31 A;  1P7Y A;  2A9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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