4CABA

The refined structure of catalase dr1998 from deinococcus radiodurans at 2.6 a resolution
Total Genus 147
100200300400500020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
507
structure length
507
Chain Sequence
GTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRDPRGFAVKFYTEDGNWDLVGNNLKIFFIRDALKFPDLIHSQKPSPTTNIQSQERIFDFFAGSPEATHMITLLYSPWGIPASYRFMQGSGVNTYKWVNDQGEGVLVKYHWEPVQGVRNLTQMQADEVQATNFNHATQDLHDAIERGDFPQWDLFVQIMEDGEHPELDFDPLDDTKIWPREQFPWRHVGQMTLNRNPENVFAETEQAAFGTGVLVDGLDFSDDKMLQGRTFSYSDTQRYRVGPNYLQLPINAPKKHVATNQRDGQMAYRVDTFEGQDQRVNYEPSLLSGPKEAPRRAPEHTPRVEGNLVRAAIERPNPFGQAGMQYRNFADWERDELVSNLSGALAGVDKRIQDKMLEYFTAADADYGQRVREGIQAKEAEMKGQKQEAPVYGTEASSLY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TVIII1 (41-44)TIV1 (43-46)3H1 (102-104)EMPTYTI3 (149-152)TIV2 (49-52)S2 (96-97)TIV6 (96-99)TI2 (51-54)S9 (240-249)TI10 (309-312)TIV3 (57-60)TIV5 (81-84)S11 (322-331)TVIII2 (78-81)TIV4 (79-82)S4 (116-125)S1 (84-93)TII1 (113-116)3H2 (109-111)S3 (100-101)TI4 (182-185)O2 (227-229)TIV8 (183-186)TI11 (315-318)AH7 (360-377)TIV11 (317-320)AH6 (271-282)TIV7 (134-137)S6 (152-159)3H3 (169-171)AH2 (172-179)S7 (225-226)AH3 (190-199)TI5 (219-222)AH5 (258-266)3H4 (201-203)3H5 (213-215)TIV10 (268-271)O4 (406-408)AH4 (204-211)TIV9 (220-223)S8 (231-234)TI6 (235-238)TI8 (300-303)O3 (283-285)TIV14 (421-424)TI9 (306-309)TI13 (346-349)PH1 (337-341)TII3 (351-354)3H6 (381-383)TI14 (378-381)TI15 (384-387)TII5 (409-412)AH8 (455-464)TIV16 (449-452)AH10 (486-499)AH11 (501-519)TI1 (35-38)AH1 (61-71)S10 (287-296)TII2 (130-133)S5 (142-149)TI7 (249-252)S12 (354-355)AH9 (467-481)TIV15 (431-434)TVIII3 (333-336)TII6 (481-484)Updating...
connected with : NaN
molecule tags Oxidoreductase
publication title Structure of the Mono-Functional Heme Catalase Dr1998 from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords CATALASE
total genus 147
structure length 507
sequence length 507
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2013-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4cabA00
1CF9A 3PQ7A 3EJ6A 3P9QA 3TTWA 1GWFA 2CAGA 4E37A 2CAHA 3PQ3A 1GGJA 4QOLA 4AUEA 4QOQA 1QWSA 3PQ4A 2XF2A 3VU3A 3PQ5A 1GWHA 4B40A 1P81A 4AULA 1GGEA 1GGKA 4AUMA 5BV2P 1GWEA 2A9EA 1GGFA 4ENVA 3P9RA 3TTTA 4QOOA 3TTXA 3ZJ5A 1QWMA 4ENTA 4B5KA 3P9PA 1M85A 4ENUA 1U5UA 3P9SA 4ENPA 1F4JA 4QORA 4ENSA 1IPHA 4QOMA 1GGHA 1E93A 1P80A 4B2YA 1H7KA 1MQFA 3PQ8A 3PQ6A 2XQ1A 2IQFA 1NM0A 4AJ9A 4B31A 1GG9A 1M7SA 4QONA 4B7AA 4BFLA 3TTUA 4QOPA 3TTVA 2J2MA 4ENWA 2ISAA 4BIMA 1H6NA 1P7ZA 3HB6A 4AUNA 1QWLA 3PQ2A 1QF7A 4CABA 2IUFA 4ENQA 1P7YA 1SY7A 1SI8A 3ZJ4A 1HBZA 3DY5A 1A4EA 4ENRA
chains in the Genus database with same CATH superfamily
1CF9A 3PQ7A 3EJ6A 3P9QA 3TTWA 1GWFA 2CAGA 4E37A 4BLCA 8CATA 2CAHA 3NWLA 3PQ3A 1GGJA 4QOLA 4AUEA 4QOQA 1QWSA 3PQ4A 2XF2A 3J7BA 3VU3A 4B7HA 3PQ5A 1GWHA 4B40A 1P81A 1GGEA 4AULA 1GGKA 1DGBA 4AUMA 5BV2P 1GWEA 4B7GA 2A9EA 1GGFA 4ENVA 3P9RA 3TTTA 4QOOA 3TTXA 5GKNA 3ZJ5A 1QWMA 3E4YA 4ENTA 4B5KA 3P9PA 1M85A 4ENUA 1U5UA 3P9SA 4ENPA 1F4JA 4QORA 4ENSA 1TGUA 1DGHB 4B7FA 1IPHA 4QOMA 7CATA 1GGHA 1DGGA 1E93A 1P80A 4B2YA 1H7KA 3RE8A 1MQFA 1QQWA 3PQ8A 3PQ6A 2XQ1A 2IQFA 1NM0A 4AJ9A 4B31A 1GG9A 1M7SA 4QONA 4B7AA 1TH4A 4BFLA 4QOPA 3TTUA 3RGSA 3TTVA 1DGFA 3RGPA 2J2MA 4ENWA 2ISAA 3E4WA 1TH2A 1H6NA 4BIMA 1P7ZA 3HB6A 4AUNA 1TH3A 1QWLA 3PQ2A 1QF7A 4CABA 2IUFA 4ENQA 1P7YA 1SY7A 1SI8A 3ZJ4A 1HBZA 1DGHA 3DY5A 1A4EA 4ENRA
chains in the Genus database with same CATH topology
1CF9A 3PQ7A 3EJ6A 3P9QA 3TTWA 1GWFA 2CAGA 4E37A 2CAHA 3PQ3A 1GGJA 4QOLA 4AUEA 4QOQA 1QWSA 3PQ4A 2XF2A 3VU3A 3PQ5A 1GWHA 4B40A 1P81A 4AULA 1GGEA 1GGKA 4AUMA 5BV2P 1GWEA 2A9EA 1GGFA 4ENVA 3P9RA 3TTTA 4QOOA 3TTXA 3ZJ5A 1QWMA 4ENTA 4B5KA 3P9PA 1M85A 4ENUA 1U5UA 3P9SA 4ENPA 1F4JA 4QORA 4ENSA 1IPHA 4QOMA 1GGHA 1E93A 1P80A 4B2YA 1H7KA 1MQFA 3PQ8A 3PQ6A 2XQ1A 2IQFA 1NM0A 4AJ9A 4B31A 1GG9A 1M7SA 4QONA 4B7AA 4BFLA 3TTUA 4QOPA 3TTVA 2J2MA 4ENWA 2ISAA 4BIMA 1H6NA 1P7ZA 3HB6A 4AUNA 1QWLA 3PQ2A 1QF7A 4CABA 2IUFA 4ENQA 1P7YA 1SY7A 1SI8A 3ZJ4A 1HBZA 3DY5A 1A4EA 4ENRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CF9 A;  3PQ7 A;  3EJ6 A;  3P9Q A;  3TTW A;  1GWF A;  2CAG A;  4E37 A;  2CAH A;  3PQ3 A;  1GGJ A;  4QOL A;  4AUE A;  4QOQ A;  1QWS A;  3PQ4 A;  2XF2 A;  3VU3 A;  3PQ5 A;  1GWH A;  4B40 A;  1P81 A;  4AUL A;  1GGE A;  1GGK A;  4AUM A;  5BV2 P;  1GWE A;  2A9E A;  1GGF A;  4ENV A;  3P9R A;  3TTT A;  4QOO A;  3TTX A;  3ZJ5 A;  1QWM A;  4ENT A;  4B5K A;  3P9P A;  1M85 A;  4ENU A;  1U5U A;  3P9S A;  4ENP A;  1F4J A;  4QOR A;  4ENS A;  1IPH A;  4QOM A;  1GGH A;  1E93 A;  1P80 A;  4B2Y A;  1H7K A;  1MQF A;  3PQ8 A;  3PQ6 A;  2XQ1 A;  2IQF A;  1NM0 A;  4AJ9 A;  4B31 A;  1GG9 A;  1M7S A;  4QON A;  4B7A A;  4BFL A;  3TTU A;  4QOP A;  3TTV A;  2J2M A;  4ENW A;  2ISA A;  4BIM A;  1H6N A;  1P7Z A;  3HB6 A;  4AUN A;  1QWL A;  3PQ2 A;  1QF7 A;  4CAB A;  2IUF A;  4ENQ A;  1P7Y A;  1SY7 A;  1SI8 A;  3ZJ4 A;  1HBZ A;  3DY5 A;  1A4E A;  4ENR A; 
#chains in the Genus database with same CATH topology
 1CF9 A;  3PQ7 A;  3EJ6 A;  3P9Q A;  3TTW A;  1GWF A;  2CAG A;  4E37 A;  4BLC A;  8CAT A;  2CAH A;  3NWL A;  3PQ3 A;  1GGJ A;  4QOL A;  4AUE A;  4QOQ A;  1QWS A;  3PQ4 A;  2XF2 A;  3J7B A;  3VU3 A;  4B7H A;  3PQ5 A;  1GWH A;  4B40 A;  1P81 A;  1GGE A;  4AUL A;  1GGK A;  1DGB A;  4AUM A;  5BV2 P;  1GWE A;  4B7G A;  2A9E A;  1GGF A;  4ENV A;  3P9R A;  3TTT A;  4QOO A;  3TTX A;  5GKN A;  3ZJ5 A;  1QWM A;  3E4Y A;  4ENT A;  4B5K A;  3P9P A;  1M85 A;  4ENU A;  1U5U A;  3P9S A;  4ENP A;  1F4J A;  4QOR A;  4ENS A;  1TGU A;  1DGH B;  4B7F A;  1IPH A;  4QOM A;  7CAT A;  1GGH A;  1DGG A;  1E93 A;  1P80 A;  4B2Y A;  1H7K A;  3RE8 A;  1MQF A;  1QQW A;  3PQ8 A;  3PQ6 A;  2XQ1 A;  2IQF A;  1NM0 A;  4AJ9 A;  4B31 A;  1GG9 A;  1M7S A;  4QON A;  4B7A A;  1TH4 A;  4BFL A;  4QOP A;  3TTU A;  3RGS A;  3TTV A;  1DGF A;  3RGP A;  2J2M A;  4ENW A;  2ISA A;  3E4W A;  1TH2 A;  1H6N A;  4BIM A;  1P7Z A;  3HB6 A;  4AUN A;  1TH3 A;  1QWL A;  3PQ2 A;  1QF7 A;  4CAB A;  2IUF A;  4ENQ A;  1P7Y A;  1SY7 A;  1SI8 A;  3ZJ4 A;  1HBZ A;  1DGH A;  3DY5 A;  1A4E A;  4ENR A; 
#chains in the Genus database with same CATH homology
 1CF9 A;  3PQ7 A;  3EJ6 A;  3P9Q A;  3TTW A;  1GWF A;  2CAG A;  4E37 A;  2CAH A;  3PQ3 A;  1GGJ A;  4QOL A;  4AUE A;  4QOQ A;  1QWS A;  3PQ4 A;  2XF2 A;  3VU3 A;  3PQ5 A;  1GWH A;  4B40 A;  1P81 A;  4AUL A;  1GGE A;  1GGK A;  4AUM A;  5BV2 P;  1GWE A;  2A9E A;  1GGF A;  4ENV A;  3P9R A;  3TTT A;  4QOO A;  3TTX A;  3ZJ5 A;  1QWM A;  4ENT A;  4B5K A;  3P9P A;  1M85 A;  4ENU A;  1U5U A;  3P9S A;  4ENP A;  1F4J A;  4QOR A;  4ENS A;  1IPH A;  4QOM A;  1GGH A;  1E93 A;  1P80 A;  4B2Y A;  1H7K A;  1MQF A;  3PQ8 A;  3PQ6 A;  2XQ1 A;  2IQF A;  1NM0 A;  4AJ9 A;  4B31 A;  1GG9 A;  1M7S A;  4QON A;  4B7A A;  4BFL A;  3TTU A;  4QOP A;  3TTV A;  2J2M A;  4ENW A;  2ISA A;  4BIM A;  1H6N A;  1P7Z A;  3HB6 A;  4AUN A;  1QWL A;  3PQ2 A;  1QF7 A;  4CAB A;  2IUF A;  4ENQ A;  1P7Y A;  1SY7 A;  1SI8 A;  3ZJ4 A;  1HBZ A;  3DY5 A;  1A4E A;  4ENR A; 
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