4EQA | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	146
structure length	146
Chain Sequence	SHMQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d03bb9ea0419d54da0d07bc/pdb.gz): 1246 ms

reading 146 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

146 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:145});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Pseudomonas aeruginosa
publication title	Structural insight into how Pseudomonas aeruginosa peptidoglycanhydrolase Tse1 and its immunity protein Tsi1 function. pubmed doi rcsb
molecule keywords	Putative uncharacterized protein
total genus	42
structure length	146
sequence length	146
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-04-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	4eqaA00

4JXBA 4Q4NA 4LJ1A 3H41A 4EQAA 2LRJA 4F0WA 3NPFA 3VPJA 4FGDA 4CGKA 2IO9A 3NE0A 2VPMA 3PBIA 4HZBA 4HZ9A 2K1GA 2FG0A 3A2YA 2HBWA 4EQ8A 4HPEA 3KW0A 4EOBA 4FGIA 2XIVA 4F0VA 4F4MA 4CT3A 2K3AA 4FGEA 2IF6A 2VOBA 3A2ZA 2IOAA 4R0KA 2IO8A 4FDYA 2VPSA 4CSHA 3O98A 4FQAA 4Q4TA 3VPIA 3M1UA 3A30A 3S0QA 2EVRA 3GT2A 2IO7A 3PBCA 4OLKA 3PVQA 3I86A 4Q4GX 4FQBA 2IOBA
chains in the Genus database with same CATH superfamily

4HFLA 4JXBA 4Q4NA 4LJ1A 3H41A 4JURA 4EQAA 2LRJA 4F0WA 3NPFA 3VPJA 4FGDA 4CGKA 2IO9A 3EBQA 3NE0A 4J32A 2VPMA 3PBIA 4HZBA 4HZ9A 2K1GA 2FG0A 3A2YA 2HBWA 4EQ8A 4HPEA 3KW0A 4EOBA 4FGIA 2XIVA 4F0VA 4F4MA 4CT3A 2K3AA 4HFFA 4FGEA 2IF6A 2VOBA 3A2ZA 2IOAA 4R0KA 2IO8A 4FDYA 2VPSA 4J30A 4CSHA 3O98A 4FQAA 4Q4TA 2WP7A 3VPIA 3M1UA 4HFKA 3A30A 3S0QA 2EVRA 3GT2A 2IO7A 3PBCA 4OLKA 3PVQA 3I86A 4Q4GX 4FQBA 2IOBA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4JXB A;  4Q4N A;  4LJ1 A;  3H41 A;  4EQA A;  2LRJ A;  4F0W A;  3NPF A;  3VPJ A;  4FGD A;  4CGK A;  2IO9 A;  3NE0 A;  2VPM A;  3PBI A;  4HZB A;  4HZ9 A;  2K1G A;  2FG0 A;  3A2Y A;  2HBW A;  4EQ8 A;  4HPE A;  3KW0 A;  4EOB A;  4FGI A;  2XIV A;  4F0V A;  4F4M A;  4CT3 A;  2K3A A;  4FGE A;  2IF6 A;  2VOB A;  3A2Z A;  2IOA A;  4R0K A;  2IO8 A;  4FDY A;  2VPS A;  4CSH A;  3O98 A;  4FQA A;  4Q4T A;  3VPI A;  3M1U A;  3A30 A;  3S0Q A;  2EVR A;  3GT2 A;  2IO7 A;  3PBC A;  4OLK A;  3PVQ A;  3I86 A;  4Q4G X;  4FQB A;  2IOB A; 
#chains in the Genus database with same CATH topology
 4HFL A;  4JXB A;  4Q4N A;  4LJ1 A;  3H41 A;  4JUR A;  4EQA A;  2LRJ A;  4F0W A;  3NPF A;  3VPJ A;  4FGD A;  4CGK A;  2IO9 A;  3EBQ A;  3NE0 A;  4J32 A;  2VPM A;  3PBI A;  4HZB A;  4HZ9 A;  2K1G A;  2FG0 A;  3A2Y A;  2HBW A;  4EQ8 A;  4HPE A;  3KW0 A;  4EOB A;  4FGI A;  2XIV A;  4F0V A;  4F4M A;  4CT3 A;  2K3A A;  4HFF A;  4FGE A;  2IF6 A;  2VOB A;  3A2Z A;  2IOA A;  4R0K A;  2IO8 A;  4FDY A;  2VPS A;  4J30 A;  4CSH A;  3O98 A;  4FQA A;  4Q4T A;  2WP7 A;  3VPI A;  3M1U A;  4HFK A;  3A30 A;  3S0Q A;  2EVR A;  3GT2 A;  2IO7 A;  3PBC A;  4OLK A;  3PVQ A;  3I86 A;  4Q4G X;  4FQB A;  2IOB A; 
#chains in the Genus database with same CATH homology
 4JXB A;  4Q4N A;  4LJ1 A;  3H41 A;  4EQA A;  2LRJ A;  4F0W A;  3NPF A;  3VPJ A;  4FGD A;  4CGK A;  2IO9 A;  3NE0 A;  2VPM A;  3PBI A;  4HZB A;  4HZ9 A;  2K1G A;  2FG0 A;  3A2Y A;  2HBW A;  4EQ8 A;  4HPE A;  3KW0 A;  4EOB A;  4FGI A;  2XIV A;  4F0V A;  4F4M A;  4CT3 A;  2K3A A;  4FGE A;  2IF6 A;  2VOB A;  3A2Z A;  2IOA A;  4R0K A;  2IO8 A;  4FDY A;  2VPS A;  4CSH A;  3O98 A;  4FQA A;  4Q4T A;  3VPI A;  3M1U A;  3A30 A;  3S0Q A;  2EVR A;  3GT2 A;  2IO7 A;  3PBC A;  4OLK A;  3PVQ A;  3I86 A;  4Q4G X;  4FQB A;  2IOB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4EQAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN