4F0VA

Crystal structure of type effector tse1 from pseudomonas aeruginousa
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Putative uncharacterized protein
total genus 47
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-05-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4f0vA00
4FGDA 2FG0A 3A30A 2HBWA 3PBIA 3KW0A 3VPIA 4F0WA 2IO8A 4F4MA 2IO7A 2VPMA 4FQAA 4FGEA 4OLKA 3PBCA 4Q4GX 4F0VA 4CT3A 3GT2A 3VPJA 4LJ1A 4FGIA 3S0QA 4CSHA 2LRJA 2K3AA 2K1GA 4EOBA 4EQAA 2IOBA 3NPFA 3A2YA 4CGKA 3M1UA 3NE0A 3O98A 3A2ZA 3I86A 2VPSA 4FDYA 4Q4NA 4JXBA 4HPEA 4R0KA 3H41A 4Q4TA 2EVRA 2VOBA 3PVQA 2IOAA 2XIVA 2IO9A 4FQBA 4EQ8A 2IF6A 4HZBA 4HZ9A
chains in the Genus database with same CATH superfamily
4FGDA 2FG0A 4HFLA 4J32A 3A30A 2HBWA 3PBIA 3KW0A 4HFKA 3VPIA 2IO8A 4F0WA 4F4MA 2IO7A 2VPMA 4FQAA 4FGEA 4J30A 3PBCA 4OLKA 4Q4GX 4F0VA 2WP7A 4CT3A 3GT2A 3VPJA 4LJ1A 4FGIA 3S0QA 4CSHA 2LRJA 2K3AA 2K1GA 4EOBA 4EQAA 2IOBA 3EBQA 3NPFA 3A2YA 4CGKA 3M1UA 3NE0A 3O98A 4HFFA 3A2ZA 3I86A 2VPSA 4FDYA 4Q4NA 4JXBA 4JURA 4HPEA 4R0KA 3H41A 4Q4TA 2EVRA 2VOBA 3PVQA 2IOAA 2XIVA 2IO9A 4FQBA 4EQ8A 2IF6A 4HZBA 4HZ9A
chains in the Genus database with same CATH topology
4FGDA 2FG0A 3A30A 2HBWA 3PBIA 3KW0A 3VPIA 4F0WA 2IO8A 4F4MA 2IO7A 2VPMA 4FQAA 4FGEA 4OLKA 3PBCA 4Q4GX 4F0VA 4CT3A 3GT2A 3VPJA 4LJ1A 4FGIA 3S0QA 4CSHA 2LRJA 2K3AA 2K1GA 4EOBA 4EQAA 2IOBA 3NPFA 3A2YA 4CGKA 3M1UA 3NE0A 3O98A 3A2ZA 3I86A 2VPSA 4FDYA 4Q4NA 4JXBA 4HPEA 4R0KA 3H41A 4Q4TA 2EVRA 2VOBA 3PVQA 2IOAA 2XIVA 2IO9A 4FQBA 4EQ8A 2IF6A 4HZBA 4HZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FGD A;  2FG0 A;  3A30 A;  2HBW A;  3PBI A;  3KW0 A;  3VPI A;  4F0W A;  2IO8 A;  4F4M A;  2IO7 A;  2VPM A;  4FQA A;  4FGE A;  4OLK A;  3PBC A;  4Q4G X;  4F0V A;  4CT3 A;  3GT2 A;  3VPJ A;  4LJ1 A;  4FGI A;  3S0Q A;  4CSH A;  2LRJ A;  2K3A A;  2K1G A;  4EOB A;  4EQA A;  2IOB A;  3NPF A;  3A2Y A;  4CGK A;  3M1U A;  3NE0 A;  3O98 A;  3A2Z A;  3I86 A;  2VPS A;  4FDY A;  4Q4N A;  4JXB A;  4HPE A;  4R0K A;  3H41 A;  4Q4T A;  2EVR A;  2VOB A;  3PVQ A;  2IOA A;  2XIV A;  2IO9 A;  4FQB A;  4EQ8 A;  2IF6 A;  4HZB A;  4HZ9 A; 
#chains in the Genus database with same CATH topology
 4FGD A;  2FG0 A;  4HFL A;  4J32 A;  3A30 A;  2HBW A;  3PBI A;  3KW0 A;  4HFK A;  3VPI A;  2IO8 A;  4F0W A;  4F4M A;  2IO7 A;  2VPM A;  4FQA A;  4FGE A;  4J30 A;  3PBC A;  4OLK A;  4Q4G X;  4F0V A;  2WP7 A;  4CT3 A;  3GT2 A;  3VPJ A;  4LJ1 A;  4FGI A;  3S0Q A;  4CSH A;  2LRJ A;  2K3A A;  2K1G A;  4EOB A;  4EQA A;  2IOB A;  3EBQ A;  3NPF A;  3A2Y A;  4CGK A;  3M1U A;  3NE0 A;  3O98 A;  4HFF A;  3A2Z A;  3I86 A;  2VPS A;  4FDY A;  4Q4N A;  4JXB A;  4JUR A;  4HPE A;  4R0K A;  3H41 A;  4Q4T A;  2EVR A;  2VOB A;  3PVQ A;  2IOA A;  2XIV A;  2IO9 A;  4FQB A;  4EQ8 A;  2IF6 A;  4HZB A;  4HZ9 A; 
#chains in the Genus database with same CATH homology
 4FGD A;  2FG0 A;  3A30 A;  2HBW A;  3PBI A;  3KW0 A;  3VPI A;  4F0W A;  2IO8 A;  4F4M A;  2IO7 A;  2VPM A;  4FQA A;  4FGE A;  4OLK A;  3PBC A;  4Q4G X;  4F0V A;  4CT3 A;  3GT2 A;  3VPJ A;  4LJ1 A;  4FGI A;  3S0Q A;  4CSH A;  2LRJ A;  2K3A A;  2K1G A;  4EOB A;  4EQA A;  2IOB A;  3NPF A;  3A2Y A;  4CGK A;  3M1U A;  3NE0 A;  3O98 A;  3A2Z A;  3I86 A;  2VPS A;  4FDY A;  4Q4N A;  4JXB A;  4HPE A;  4R0K A;  3H41 A;  4Q4T A;  2EVR A;  2VOB A;  3PVQ A;  2IOA A;  2XIV A;  2IO9 A;  4FQB A;  4EQ8 A;  2IF6 A;  4HZB A;  4HZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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