The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
147
|
structure length |
147
|
Chain Sequence |
SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of a peptidoglycan amidase effector targeted to Gram-negative bacteria by the type VI secretion system.
pubmed doi rcsb |
| molecule tags |
Hydrolase regulator
|
| source organism |
Pseudomonas aeruginosa
|
| molecule keywords |
papain peptidoglycan amidase effector Tse1
|
| total genus |
40
|
| structure length |
147
|
| sequence length |
147
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2012-05-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) |
#chains in the Genus database with same CATH superfamily 4LJ1 A; 4FDY A; 3VPJ A; 4CT3 A; 4F0W A; 3S0Q A; 4Q4G X; 2VPS A; 2EVR A; 2LRJ A; 3A2Z A; 4FGD A; 4CSH A; 2K1G A; 2IO7 A; 4HZB A; 4FQB A; 3PVQ A; 2IO8 A; 2XIV A; 4FQA A; 2VOB A; 3A30 A; 3I86 A; 3A2Y A; 3NPF A; 2IOB A; 2IOA A; 4HZ9 A; 4F4M A; 2K3A A; 3KW0 A; 2FG0 A; 4JXB A; 2IF6 A; 4EQ8 A; 4F0V A; 4OLK A; 3O98 A; 4R0K A; 3PBI A; 3H41 A; 3GT2 A; 3PBC A; 4HPE A; 4EQA A; 4EOB A; 2VPM A; 4Q4T A; 2IO9 A; 4FGE A; 3VPI A; 3NE0 A; 4FGI A; 4Q4N A; 4CGK A; 2HBW A; 3M1U A; #chains in the Genus database with same CATH topology 4LJ1 A; 4FDY A; 3VPJ A; 4CT3 A; 4F0W A; 3S0Q A; 4Q4G X; 2VPS A; 2EVR A; 2LRJ A; 3A2Z A; 4FGD A; 4CSH A; 4HFL A; 2K1G A; 2IO7 A; 4HZB A; 4FQB A; 4HFK A; 3PVQ A; 2IO8 A; 4J32 A; 2XIV A; 4FQA A; 2VOB A; 2WP7 A; 3A30 A; 3I86 A; 3A2Y A; 3NPF A; 2IOB A; 2IOA A; 4HZ9 A; 4F4M A; 2K3A A; 3KW0 A; 2FG0 A; 4JXB A; 2IF6 A; 3EBQ A; 4EQ8 A; 4F0V A; 4OLK A; 3O98 A; 4R0K A; 3PBI A; 3H41 A; 3GT2 A; 3PBC A; 4HPE A; 4EQA A; 4EOB A; 4HFF A; 2VPM A; 4Q4T A; 2IO9 A; 4FGE A; 4JUR A; 3VPI A; 3NE0 A; 4FGI A; 4Q4N A; 4J30 A; 4CGK A; 2HBW A; 3M1U A; #chains in the Genus database with same CATH homology 4LJ1 A; 4FDY A; 3VPJ A; 4CT3 A; 4F0W A; 3S0Q A; 4Q4G X; 2VPS A; 2EVR A; 2LRJ A; 3A2Z A; 4FGD A; 4CSH A; 2K1G A; 2IO7 A; 4HZB A; 4FQB A; 3PVQ A; 2IO8 A; 2XIV A; 4FQA A; 2VOB A; 3A30 A; 3I86 A; 3A2Y A; 3NPF A; 2IOB A; 2IOA A; 4HZ9 A; 4F4M A; 2K3A A; 3KW0 A; 2FG0 A; 4JXB A; 2IF6 A; 4EQ8 A; 4F0V A; 4OLK A; 3O98 A; 4R0K A; 3PBI A; 3H41 A; 3GT2 A; 3PBC A; 4HPE A; 4EQA A; 4EOB A; 2VPM A; 4Q4T A; 2IO9 A; 4FGE A; 3VPI A; 3NE0 A; 4FGI A; 4Q4N A; 4CGK A; 2HBW A; 3M1U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
