The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
154
|
sequence length |
480
|
structure length |
480
|
Chain Sequence |
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Bacillus pumilus
|
| molecule keywords |
Catalase
|
| total genus |
154
|
| structure length |
480
|
| sequence length |
480
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
1.11.1.6: Catalase. |
| pdb deposition date | 2014-06-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00199 | Catalase | Catalase |
| A | PF06628 | Catalase-rel | Catalase-related immune-responsive |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Catalase HpII, Chain A, domain 1 | Catalase core domain |
#chains in the Genus database with same CATH superfamily 4BIM A; 1M7S A; 4B5K A; 1E93 A; 3TTX A; 4ENV A; 3PQ6 A; 1QF7 A; 3P9S A; 4ENS A; 5BV2 P; 3P9Q A; 4B40 A; 3VU3 A; 3TTU A; 1GGE A; 1GWH A; 1P80 A; 1GGH A; 3PQ5 A; 1HBZ A; 1QWM A; 4AJ9 A; 2CAH A; 1GGF A; 3P9R A; 4QOQ A; 2A9E A; 4ENR A; 4ENW A; 4AUN A; 1GGK A; 2IUF A; 4QOR A; 4AUL A; 1QWS A; 3TTW A; 4CAB A; 2XF2 A; 3PQ2 A; 3DY5 A; 2XQ1 A; 4B7A A; 4QOM A; 3ZJ4 A; 1MQF A; 2J2M A; 4AUM A; 4QON A; 3PQ8 A; 1P81 A; 2IQF A; 3HB6 A; 4QOL A; 2ISA A; 4QOO A; 3PQ3 A; 4B31 A; 1GG9 A; 3PQ4 A; 1A4E A; 3EJ6 A; 3TTT A; 1SY7 A; 1QWL A; 4B2Y A; 1NM0 A; 1SI8 A; 1H7K A; 1CF9 A; 4ENP A; 3PQ7 A; 1U5U A; 4ENQ A; 4AUE A; 1IPH A; 1H6N A; 4E37 A; 3ZJ5 A; 1GGJ A; 4ENT A; 3TTV A; 4QOP A; 1GWE A; 4ENU A; 4BFL A; 1GWF A; 2CAG A; 1P7Z A; 3P9P A; 1F4J A; 1P7Y A; 1M85 A; #chains in the Genus database with same CATH topology 1TH3 A; 4BIM A; 3RE8 A; 1M7S A; 4B5K A; 1E93 A; 3TTX A; 3J7B A; 4BLC A; 1TH2 A; 1QQW A; 4ENV A; 3RGP A; 3PQ6 A; 1QF7 A; 3P9S A; 1TH4 A; 4ENS A; 3NWL A; 5BV2 P; 3P9Q A; 4B40 A; 3VU3 A; 1DGB A; 3TTU A; 1GGE A; 1GWH A; 1P80 A; 1GGH A; 3PQ5 A; 1HBZ A; 1DGF A; 1QWM A; 4AJ9 A; 2CAH A; 1GGF A; 3P9R A; 1DGG A; 4QOQ A; 2A9E A; 4ENR A; 4ENW A; 4AUN A; 3E4W A; 1GGK A; 2IUF A; 8CAT A; 4QOR A; 4AUL A; 1QWS A; 3TTW A; 4CAB A; 2XF2 A; 3PQ2 A; 3DY5 A; 1DGH B; 2XQ1 A; 4QOM A; 4B7A A; 3ZJ4 A; 1MQF A; 2J2M A; 4AUM A; 4QON A; 7CAT A; 3PQ8 A; 4B7F A; 1P81 A; 2IQF A; 3HB6 A; 3E4Y A; 4QOL A; 2ISA A; 4QOO A; 3PQ3 A; 4B31 A; 1GG9 A; 3PQ4 A; 1A4E A; 3EJ6 A; 3TTT A; 1SY7 A; 1QWL A; 4B2Y A; 1NM0 A; 1SI8 A; 1H7K A; 1CF9 A; 4ENP A; 3PQ7 A; 1U5U A; 4ENQ A; 1DGH A; 1TGU A; 4AUE A; 1IPH A; 1H6N A; 3RGS A; 4E37 A; 3ZJ5 A; 1GGJ A; 4ENT A; 3TTV A; 4B7H A; 4QOP A; 1GWE A; 4ENU A; 4BFL A; 5GKN A; 4B7G A; 1GWF A; 2CAG A; 1P7Z A; 3P9P A; 1F4J A; 1P7Y A; 1M85 A; #chains in the Genus database with same CATH homology 4BIM A; 1M7S A; 4B5K A; 1E93 A; 3TTX A; 4ENV A; 3PQ6 A; 1QF7 A; 3P9S A; 4ENS A; 5BV2 P; 3P9Q A; 4B40 A; 3VU3 A; 3TTU A; 1GGE A; 1GWH A; 1P80 A; 1GGH A; 3PQ5 A; 1HBZ A; 1QWM A; 4AJ9 A; 2CAH A; 1GGF A; 3P9R A; 4QOQ A; 2A9E A; 4ENR A; 4ENW A; 4AUN A; 1GGK A; 2IUF A; 4QOR A; 4AUL A; 1QWS A; 3TTW A; 4CAB A; 2XF2 A; 3PQ2 A; 3DY5 A; 2XQ1 A; 4B7A A; 4QOM A; 3ZJ4 A; 1MQF A; 2J2M A; 4AUM A; 4QON A; 3PQ8 A; 1P81 A; 2IQF A; 3HB6 A; 4QOL A; 2ISA A; 4QOO A; 3PQ3 A; 4B31 A; 1GG9 A; 3PQ4 A; 1A4E A; 3EJ6 A; 3TTT A; 1SY7 A; 1QWL A; 4B2Y A; 1NM0 A; 1SI8 A; 1H7K A; 1CF9 A; 4ENP A; 3PQ7 A; 1U5U A; 4ENQ A; 4AUE A; 1IPH A; 1H6N A; 4E37 A; 3ZJ5 A; 1GGJ A; 4ENT A; 3TTV A; 4QOP A; 1GWE A; 4ENU A; 4BFL A; 1GWF A; 2CAG A; 1P7Z A; 3P9P A; 1F4J A; 1P7Y A; 1M85 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
