5DBN | Genus

Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	59
sequence length	215
structure length	215
Chain Sequence	KTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 215 atoms

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215 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli dh5[alpha]
publication title	Crystal structure of AtoDA complex rcsb
molecule keywords	Acetate CoA-transferase subunit alpha
total genus	59
structure length	215
sequence length	215
chains with identical sequence	C, E, G
ec nomenclature	ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date	2015-08-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01144	CoA_trans	Coenzyme A transferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	5dbnA00

2AHUA 1OOYA 1POIB 3D3UA 1POIA 1XR4A 2NRCA 2OASA 3EH7A 1K6DA 2NRBA 3GK7A 2AHWA 3DLXA 1M3EA 5DBNA 5DBNB 4KGBA 2AHVA 1OOZA 3CDKA 3K6MA 3RRLB 1OPEA 3CDKB 3RRLA 3OXOA 3QDQA 1O9LA 2HJ0A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2AHU A;  1OOY A;  1POI B;  3D3U A;  1POI A;  1XR4 A;  2NRC A;  2OAS A;  3EH7 A;  1K6D A;  2NRB A;  3GK7 A;  2AHW A;  3DLX A;  1M3E A;  5DBN A;  5DBN B;  4KGB A;  2AHV A;  1OOZ A;  3CDK A;  3K6M A;  3RRL B;  1OPE A;  3CDK B;  3RRL A;  3OXO A;  3QDQ A;  1O9L A;  2HJ0 A; 
#chains in the Genus database with same CATH topology
 2AHU A;  1OOY A;  1POI B;  3D3U A;  1POI A;  1XR4 A;  2NRC A;  2OAS A;  3EH7 A;  1K6D A;  2NRB A;  3GK7 A;  2AHW A;  3DLX A;  1M3E A;  5DBN A;  5DBN B;  4KGB A;  2AHV A;  1OOZ A;  3CDK A;  3K6M A;  3RRL B;  1OPE A;  3CDK B;  3RRL A;  3OXO A;  3QDQ A;  1O9L A;  2HJ0 A; 
#chains in the Genus database with same CATH homology
 2AHU A;  1OOY A;  1POI B;  3D3U A;  1POI A;  1XR4 A;  2NRC A;  2OAS A;  3EH7 A;  1K6D A;  2NRB A;  3GK7 A;  2AHW A;  3DLX A;  1M3E A;  5DBN A;  5DBN B;  4KGB A;  2AHV A;  1OOZ A;  3CDK A;  3K6M A;  3RRL B;  1OPE A;  3CDK B;  3RRL A;  3OXO A;  3QDQ A;  1O9L A;  2HJ0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5DBNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations