5DBNB

Crystal structure of atoda complex
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
213
structure length
213
Chain Sequence
DAKQRIARRVAQELRDGDIVNLGIGLPTMVANYLPEGIHITLQSENGFLGLGPVTTAHPDLVNAGGQPCGVLPGAAMFDSAMSFALIRGGHIDACVLGGLQVDEEANLANWVVPGKMVPGMGGAMDLVTGSRKVIIAMEHCAKDGSAKILRRCTMPLTAQHAVHMLVTELAVFRFIDGKMWLTEIADGCDLATVRAKTEARFEVAADLNTQRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (2-14)EMPTYS12 (180-186)TVIII2 (132-135)S11 (172-177)S1 (20-23)TVIII1 (93-96)TII2 (36-39)TI1 (45-48)TI2 (59-62)S4 (71-78)S3 (49-53)TIV2 (55-58)AH2 (81-90)AH3 (124-131)S5 (95-98)S7 (109-110)TVIII3 (151-154)S6 (102-104)TIV3 (148-151)S9 (150-151)TIV4 (158-161)TII4 (114-117)TI5 (143-146)S10 (166-169)TI6 (169-172)TIV6 (176-179)S13 (204-205)TII5 (187-190)TI7 (206-209)TIV7 (208-211)TII1 (16-19)S2 (42-45)TI4 (104-107)TIV5 (160-163)S8 (134-138)AH4 (192-198)3H1 (28-33)TIV1 (25-28)TI3 (64-67)Updating...
connected with : NaN
molecule tags Transferase
source organism Escherichia coli dh5[alpha]
publication title Crystal structure of AtoDA complex
rcsb
molecule keywords Acetate CoA-transferase subunit alpha
total genus 53
structure length 213
sequence length 213
chains with identical sequence D, F, H
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2015-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 5dbnB00
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH superfamily
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH topology
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
#chains in the Genus database with same CATH topology
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
#chains in the Genus database with same CATH homology
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.