1NI6A

Comparisions of the heme-free and-bound crystal structures of human heme oxygenase-1
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
215
structure length
215
Chain Sequence
PQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Comparison of the heme-free and -bound crystal structures of human heme oxygenase-1
pubmed doi rcsb
molecule tags Oxygen storage/transport
source organism Homo sapiens
molecule keywords Heme oxygenase 1
total genus 86
structure length 215
sequence length 215
chains with identical sequence B, C, D
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2002-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1ni6A00
1P3VA 1OTWA 2Q4XA 1J77A 3DDEA 1TO9A 3I8RA 1IW0A 1SK7A 1XJZA 4G99A 2RGZA 2Z68A 4WD4A 1OZEA 4GPFA 1YAFA 1WOWA 3HMLA 2QZCA 3HOKA 4G7UA 1P3TA 1IW1A 1NI6A 1IX4A 4G8PA 4G7TA 3OQLA 4FN6A 1J02A 2QCXA 3BJDA 1J2CA 1OZWA 1S8CA 1RTWA 2QPPA 4WWJA 1TO9B 3TGMA 1OZLA 4WX0A 1RCWA 1V8XA 4RAJA 1WZGA 4G7PA 1OTVA 1IRMA 3B5PA 3HLXA 4GOHA 3B5OA 1OYKA 4G8UA 1P3UA 1VGIA 1TWNA 2A2OA 1IX3A 1N45A 1YAKA 1XK1A 3I9TA 4NY7A 1DVEA 4WWZA 1WOVA 3CZYA 2DY5A 1WE1A 1Z72A 5BTQA 2A6BA 1XK3A 4G8WA 3MVUA 2ZVUA 4G98A 4LQXA 1N3UA 3MOOA 1T5PA 4GPHA 1OYLA 1WNVA 3NO6A 2GM7A 3I9UA 1S13A 1UDDA 1WOXA 2E7EA 2GM8A 4GPCA 3K4FA 3HNHA 1WZDA 1UBBA 1TWRA 3IBXA 1WNXA 1XK2A 4G7LA 1WZFA 4MECA 1OZRA 1XK0A 4WMHA 1DVGA 2A2MA 2Q32A 1TYHA 3RM5A 2F2GA 1WNWA 1WWMA 1ULXA 1IVJA 2RD3A
chains in the Genus database with same CATH superfamily
1P3VA 1OTWA 2Q4XA 1J77A 3DDEA 1TO9A 3I8RA 1IW0A 1SK7A 1XJZA 4G99A 2RGZA 2Z68A 4WD4A 1OZEA 4GPFA 1YAFA 1WOWA 3HMLA 2QZCA 3HOKA 4G7UA 1P3TA 1IW1A 1NI6A 1IX4A 4G8PA 4G7TA 3OQLA 4FN6A 1J02A 2QCXA 3BJDA 1J2CA 1OZWA 1S8CA 1RTWA 2QPPA 4WWJA 1TO9B 3TGMA 1OZLA 4WX0A 1RCWA 1V8XA 4RAJA 1WZGA 4G7PA 1OTVA 1IRMA 3B5PA 3HLXA 4GOHA 3B5OA 1OYKA 4G8UA 1P3UA 1VGIA 1TWNA 2A2OA 1IX3A 1N45A 1YAKA 1XK1A 3I9TA 4NY7A 1DVEA 4WWZA 1WOVA 3CZYA 2DY5A 1WE1A 1Z72A 5BTQA 2A6BA 1XK3A 4G8WA 3MVUA 2ZVUA 4G98A 4LQXA 1N3UA 3MOOA 1T5PA 4GPHA 1OYLA 1WNVA 3NO6A 2GM7A 3I9UA 1S13A 1UDDA 1WOXA 2E7EA 2GM8A 4GPCA 3K4FA 3HNHA 1WZDA 1UBBA 1TWRA 3IBXA 1WNXA 1XK2A 4G7LA 1WZFA 4MECA 1OZRA 1XK0A 4WMHA 1DVGA 2A2MA 2Q32A 1TYHA 3RM5A 2F2GA 1WNWA 1WWMA 1ULXA 1IVJA 2LCUA 2RD3A
chains in the Genus database with same CATH topology
1P3VA 1OTWA 2Q4XA 1J77A 3DDEA 1TO9A 3I8RA 1IW0A 1SK7A 1XJZA 4G99A 2RGZA 2Z68A 4WD4A 1OZEA 4GPFA 1YAFA 1WOWA 3HMLA 2QZCA 3HOKA 4G7UA 1P3TA 1IW1A 1NI6A 1IX4A 4G8PA 4G7TA 3OQLA 4FN6A 1J02A 2QCXA 3BJDA 1J2CA 1OZWA 1S8CA 1RTWA 2QPPA 4WWJA 1TO9B 3TGMA 1OZLA 4WX0A 1RCWA 1V8XA 4RAJA 1WZGA 4G7PA 1OTVA 1IRMA 3B5PA 3HLXA 4GOHA 3B5OA 1OYKA 4G8UA 1P3UA 1VGIA 1TWNA 2A2OA 1IX3A 1N45A 1YAKA 1XK1A 3I9TA 4NY7A 1DVEA 4WWZA 1WOVA 3CZYA 2DY5A 1WE1A 1Z72A 5BTQA 2A6BA 1XK3A 4G8WA 3MVUA 2ZVUA 4G98A 4LQXA 1N3UA 3MOOA 1T5PA 4GPHA 1OYLA 1WNVA 3NO6A 2GM7A 3I9UA 1S13A 1UDDA 1WOXA 2E7EA 2GM8A 4GPCA 3K4FA 3HNHA 1WZDA 1UBBA 1TWRA 3IBXA 1WNXA 1XK2A 4G7LA 1WZFA 4MECA 1OZRA 1XK0A 4WMHA 1DVGA 2A2MA 2Q32A 1TYHA 3RM5A 2F2GA 1WNWA 1WWMA 1ULXA 1IVJA 2RD3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P3V A;  1OTW A;  2Q4X A;  1J77 A;  3DDE A;  1TO9 A;  3I8R A;  1IW0 A;  1SK7 A;  1XJZ A;  4G99 A;  2RGZ A;  2Z68 A;  4WD4 A;  1OZE A;  4GPF A;  1YAF A;  1WOW A;  3HML A;  2QZC A;  3HOK A;  4G7U A;  1P3T A;  1IW1 A;  1NI6 A;  1IX4 A;  4G8P A;  4G7T A;  3OQL A;  4FN6 A;  1J02 A;  2QCX A;  3BJD A;  1J2C A;  1OZW A;  1S8C A;  1RTW A;  2QPP A;  4WWJ A;  1TO9 B;  3TGM A;  1OZL A;  4WX0 A;  1RCW A;  1V8X A;  4RAJ A;  1WZG A;  4G7P A;  1OTV A;  1IRM A;  3B5P A;  3HLX A;  4GOH A;  3B5O A;  1OYK A;  4G8U A;  1P3U A;  1VGI A;  1TWN A;  2A2O A;  1IX3 A;  1N45 A;  1YAK A;  1XK1 A;  3I9T A;  4NY7 A;  1DVE A;  4WWZ A;  1WOV A;  3CZY A;  2DY5 A;  1WE1 A;  1Z72 A;  5BTQ A;  2A6B A;  1XK3 A;  4G8W A;  3MVU A;  2ZVU A;  4G98 A;  4LQX A;  1N3U A;  3MOO A;  1T5P A;  4GPH A;  1OYL A;  1WNV A;  3NO6 A;  2GM7 A;  3I9U A;  1S13 A;  1UDD A;  1WOX A;  2E7E A;  2GM8 A;  4GPC A;  3K4F A;  3HNH A;  1WZD A;  1UBB A;  1TWR A;  3IBX A;  1WNX A;  1XK2 A;  4G7L A;  1WZF A;  4MEC A;  1OZR A;  1XK0 A;  4WMH A;  1DVG A;  2A2M A;  2Q32 A;  1TYH A;  3RM5 A;  2F2G A;  1WNW A;  1WWM A;  1ULX A;  1IVJ A;  2RD3 A; 
#chains in the Genus database with same CATH topology
 1P3V A;  1OTW A;  2Q4X A;  1J77 A;  3DDE A;  1TO9 A;  3I8R A;  1IW0 A;  1SK7 A;  1XJZ A;  4G99 A;  2RGZ A;  2Z68 A;  4WD4 A;  1OZE A;  4GPF A;  1YAF A;  1WOW A;  3HML A;  2QZC A;  3HOK A;  4G7U A;  1P3T A;  1IW1 A;  1NI6 A;  1IX4 A;  4G8P A;  4G7T A;  3OQL A;  4FN6 A;  1J02 A;  2QCX A;  3BJD A;  1J2C A;  1OZW A;  1S8C A;  1RTW A;  2QPP A;  4WWJ A;  1TO9 B;  3TGM A;  1OZL A;  4WX0 A;  1RCW A;  1V8X A;  4RAJ A;  1WZG A;  4G7P A;  1OTV A;  1IRM A;  3B5P A;  3HLX A;  4GOH A;  3B5O A;  1OYK A;  4G8U A;  1P3U A;  1VGI A;  1TWN A;  2A2O A;  1IX3 A;  1N45 A;  1YAK A;  1XK1 A;  3I9T A;  4NY7 A;  1DVE A;  4WWZ A;  1WOV A;  3CZY A;  2DY5 A;  1WE1 A;  1Z72 A;  5BTQ A;  2A6B A;  1XK3 A;  4G8W A;  3MVU A;  2ZVU A;  4G98 A;  4LQX A;  1N3U A;  3MOO A;  1T5P A;  4GPH A;  1OYL A;  1WNV A;  3NO6 A;  2GM7 A;  3I9U A;  1S13 A;  1UDD A;  1WOX A;  2E7E A;  2GM8 A;  4GPC A;  3K4F A;  3HNH A;  1WZD A;  1UBB A;  1TWR A;  3IBX A;  1WNX A;  1XK2 A;  4G7L A;  1WZF A;  4MEC A;  1OZR A;  1XK0 A;  4WMH A;  1DVG A;  2A2M A;  2Q32 A;  1TYH A;  3RM5 A;  2F2G A;  1WNW A;  1WWM A;  1ULX A;  1IVJ A;  2LCU A;  2RD3 A; 
#chains in the Genus database with same CATH homology
 1P3V A;  1OTW A;  2Q4X A;  1J77 A;  3DDE A;  1TO9 A;  3I8R A;  1IW0 A;  1SK7 A;  1XJZ A;  4G99 A;  2RGZ A;  2Z68 A;  4WD4 A;  1OZE A;  4GPF A;  1YAF A;  1WOW A;  3HML A;  2QZC A;  3HOK A;  4G7U A;  1P3T A;  1IW1 A;  1NI6 A;  1IX4 A;  4G8P A;  4G7T A;  3OQL A;  4FN6 A;  1J02 A;  2QCX A;  3BJD A;  1J2C A;  1OZW A;  1S8C A;  1RTW A;  2QPP A;  4WWJ A;  1TO9 B;  3TGM A;  1OZL A;  4WX0 A;  1RCW A;  1V8X A;  4RAJ A;  1WZG A;  4G7P A;  1OTV A;  1IRM A;  3B5P A;  3HLX A;  4GOH A;  3B5O A;  1OYK A;  4G8U A;  1P3U A;  1VGI A;  1TWN A;  2A2O A;  1IX3 A;  1N45 A;  1YAK A;  1XK1 A;  3I9T A;  4NY7 A;  1DVE A;  4WWZ A;  1WOV A;  3CZY A;  2DY5 A;  1WE1 A;  1Z72 A;  5BTQ A;  2A6B A;  1XK3 A;  4G8W A;  3MVU A;  2ZVU A;  4G98 A;  4LQX A;  1N3U A;  3MOO A;  1T5P A;  4GPH A;  1OYL A;  1WNV A;  3NO6 A;  2GM7 A;  3I9U A;  1S13 A;  1UDD A;  1WOX A;  2E7E A;  2GM8 A;  4GPC A;  3K4F A;  3HNH A;  1WZD A;  1UBB A;  1TWR A;  3IBX A;  1WNX A;  1XK2 A;  4G7L A;  1WZF A;  4MEC A;  1OZR A;  1XK0 A;  4WMH A;  1DVG A;  2A2M A;  2Q32 A;  1TYH A;  3RM5 A;  2F2G A;  1WNW A;  1WWM A;  1ULX A;  1IVJ A;  2RD3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...