The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
95
|
sequence length |
247
|
structure length |
247
|
Chain Sequence |
MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIPNPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Escherichia coli Protein ybgI, a toroidal structure with a dinuclear metal site
pubmed doi rcsb |
| molecule keywords |
Hypothetical protein ybgI
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Escherichia coli, escherichia coli o157:h7
|
| total genus |
95
|
| structure length |
247
|
| sequence length |
247
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2003-01-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01784 | NIF3 | NIF3 (NGG1p interacting factor 3) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 | NIF3 (NGG1p interacting factor 3)-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 | NIF3 (NGG1p interacting factor 3)-like |
#chains in the Genus database with same CATH superfamily 1NMO A; 3WSG A; 3WSI A; 3WSH A; 3WSE A; 3WSF A; 3WSD A; 1NMP A; 4IWM A; 2YYB A; 2FYW A; 4IWG A; #chains in the Genus database with same CATH topology 3WSG A; 4IHG A; 4BUB A; 3WSF A; 2AM2 A; 2XJA A; 2FYW A; 4IWG A; 4IHF A; 2IOJ A; 3WSI A; 3WSD A; 2AM1 A; 3EEQ A; 4CVL A; 2WTZ A; 1NMO A; 4ZIY A; 2IU9 A; 3EH0 A; 4CVK A; 3ZL8 A; 3ZM6 A; 3ZM5 A; 4E75 A; 4QDI A; 1E8C A; 4QF5 A; 4IWM A; 1KNX A; 2YYB A; 3L31 A; 3L2B A; 3WSH A; 3PMO A; 4CVM A; 1KO7 A; 4C12 A; 1NMP A; 1GG4 A; 2IUA A; 4E79 A; 4IHH A; 2IU8 A; 4C13 A; 3WSE A; #chains in the Genus database with same CATH homology 1NMO A; 3WSG A; 3WSI A; 3WSH A; 3WSE A; 3WSF A; 3WSD A; 1NMP A; 4IWM A; 2YYB A; 2FYW A; 4IWG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
