The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
120
|
sequence length |
337
|
structure length |
337
|
Chain Sequence |
VQQYRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTFVNGEKHLDQAKVSRAGAYIVTAALKEHLPEKDNFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFENNHWKKTIVRLRQLADVPLTQITKRLD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure determination of LpxD from the lipopolysaccharide-synthesis pathway of Acinetobacter baumannii.
pubmed doi rcsb |
| molecule keywords |
UDP-3-O-acylglucosamine N-acyltransferase
|
| molecule tags |
Transferase
|
| source organism |
Acinetobacter baumannii
|
| total genus |
120
|
| structure length |
337
|
| sequence length |
337
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature |
ec
2.3.1.-: |
| pdb deposition date | 2012-03-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00132 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
| A | PF04613 | LpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD |
| A | PF14602 | Hexapep_2 | Hexapeptide repeat of succinyl-transferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 | MurE/MurF, N-terminal domain |
#chains in the Genus database with same CATH superfamily 5DG3 A; 2V0K A; 2OEG A; 3FWW A; 3OU9 A; 4IHF A; 2ICY A; 4KPX A; 4M9C A; 4EA7 A; 3I3X A; 2IC7 A; 3ST8 A; 5AFU U; 3TIS A; 3FSB A; 1HM9 A; 4KNX A; 1MRL A; 3FTT A; 3MQG A; 2QKX A; 4AC3 A; 4EGG A; 2QIV X; 3P47 A; 3R3I A; 4HUR A; 4N69 A; 4R7P A; 1HM0 A; 2QIA A; 3GOS A; 5L6S A; 1OCX A; 2AM1 A; 2XAT A; 1XHD A; 3KWE A; 4EA8 A; 4AAW A; 2V0J A; 4BUB A; 1TDT A; 3VBI A; 3VBM A; 4G3Q A; 2IU9 A; 1G97 A; 3TWD A; 3D8V A; 4E1K A; 2I5K A; 2JF3 A; 3NZ2 A; 2AQ9 A; 4H7O A; 2OI6 A; 4IHH A; 3F1X A; 3OTZ A; 4E6T A; 1MR7 A; 2RIJ A; 4M99 A; 2GGO A; 3MC4 A; 3Q1X A; 4G3P A; 4M2B A; 4KNR A; 1GG4 A; 4ZIY A; 1HV9 A; 2P2O A; 3OUP A; 5ADX U; 4CVL A; 2W0V A; 4ISX A; 4M98 A; 2IUA A; 1E8C A; 1YP3 A; 5E3P A; 1KGT A; 3KWC A; 3FSC A; 4CVK A; 1V3W A; 4MZU A; 4E75 A; 4EAA A; 4HUS A; 4C13 A; 2NPO A; 2WLF A; 3R5C A; 4C12 A; 5L6V A; 2GGQ A; 4M2A A; 5E3Q A; 3KWD A; 3SPT A; 4QF5 A; 4MFG A; 3HJJ A; 3EEV A; 1HM8 A; 3OTM A; 3EG4 A; 5AFU V; 3BXY A; 3R3R A; 3R1W A; 3VBN A; 4CVM A; 3FS8 A; 1FWY A; 4J18 A; 1QRG A; 2ICX A; 1KK6 A; 2OI5 A; 4K6R A; 3R5A A; 4J09 A; 2V0L A; 4HZC A; 3FSX A; 2VD4 A; 4E79 A; 3TDT A; 1MR9 A; 3R8Y A; 3T57 A; 2IU8 A; 1THJ A; 3EH0 A; 3BSS A; 1KK5 A; 1KRR A; 3TV0 A; 4KQL A; 3VBL A; 4EQY A; 3V4E A; 1Z90 A; 2WLE A; 3BFP A; 3DHO A; 4G3S A; 3BSW A; 1G95 A; 1LXA A; 3DK5 A; 1QQ0 A; 4N6B A; 5DEP A; 5F42 A; 2V0H A; 1V67 A; 3VBP A; 4G87 A; 1KQA A; 3CJ8 A; 3VBJ A; 3ZM6 A; 3DJ4 A; 2WTZ A; 3PMO A; 2WLG A; 4MYO A; 5DEM A; 3FOQ A; 3HSQ A; 3R5D A; 3TK8 A; 3SRT A; 3VBK A; 4AA7 A; 4DCL A; 5ADX V; 4KPZ A; 4IHG A; 2WLD A; 2XJA A; 3IGJ A; 3R5B A; 4FCE A; 4EA9 A; 2JF2 A; 2OI7 A; 3FSY A; 3R0S A; 2TDT A; 1QRE A; 1T3D A; 1J2Z A; 3BSY A; 3P1B A; 4HCQ A; 4E6U A; 1KRU A; 2V0I A; 2WLC A; 1KRV A; 5U2K A; 1KK4 A; 4QDI A; 1QRF A; 2VHE A; 1QRM A; 1XAT A; 3ZM5 A; 2W0W A; 3R2W A; 4EAB A; 3ZL8 A; 2FKO A; 3TIO A; 1KHR A; 3ECT A; 3GUE A; 4N27 A; 3C8V A; 5E3R A; 2OEF A; 1S80 A; 4R36 A; 1SST A; 1SSQ A; 1YP4 A; 2Q4J A; 3OW5 A; 1SSM A; 4HZD A; 3JQY A; 4M28 A; 3I3A A; 3MQH A; 4N6A A; 3VNP A; 1KGQ A; 3GVD A; 3D98 A; 3IXC A; 2AM2 A; 1QRL A; 4R37 A; 1FXJ A; 3BRK X; 1YP2 A; #chains in the Genus database with same CATH topology 5DG3 A; 2V0K A; 2OEG A; 3FWW A; 1KO7 A; 3OU9 A; 4IHF A; 2ICY A; 4KPX A; 4M9C A; 4EA7 A; 3I3X A; 2IC7 A; 3ST8 A; 5AFU U; 3TIS A; 1EWW A; 3FSB A; 1HM9 A; 4KNX A; 1MRL A; 3FTT A; 3MQG A; 2QKX A; 4AC3 A; 3WSF A; 3OH4 A; 4EGG A; 2QIV X; 3P47 A; 3R3I A; 4HUR A; 4N69 A; 4R7P A; 1HM0 A; 2QIA A; 3GOS A; 3SUC A; 5L6S A; 1OCX A; 2AM1 A; 2XAT A; 1NMO A; 1XHD A; 3KWE A; 3L2B A; 4EA8 A; 4AAW A; 2V0J A; 4BUB A; 1TDT A; 3VBI A; 3VBM A; 4G3Q A; 2IU9 A; 1G97 A; 3TWD A; 3D8V A; 4E1K A; 3WSE A; 2I5K A; 3GQ8 A; 2JF3 A; 3OGZ A; 3WSD A; 3NZ2 A; 3OH2 A; 2AQ9 A; 3GQ7 A; 2OI6 A; 4H7O A; 3F1X A; 3OTZ A; 4IHH A; 1MR7 A; 2RIJ A; 3GQA A; 4M99 A; 4E6T A; 2GGO A; 3MC4 A; 3Q1X A; 4G3P A; 4M2B A; 4KNR A; 1GG4 A; 4ZIY A; 1HV9 A; 2P2O A; 3OUP A; 5ADX U; 4CVL A; 2W0V A; 4ISX A; 4M98 A; 2IUA A; 1E8C A; 1YP3 A; 5E3P A; 2FYW A; 3OH1 A; 1KGT A; 3KWC A; 3FSC A; 4CVK A; 1V3W A; 4MZU A; 4E75 A; 4EAA A; 4HUS A; 4C13 A; 2NPO A; 2WLF A; 3R5C A; 4C12 A; 1M8N A; 5L6V A; 2GGQ A; 4M2A A; 5E3Q A; 3KWD A; 3SPT A; 4QF5 A; 4MFG A; 3HJJ A; 3EEV A; 3EEQ A; 1HM8 A; 3OTM A; 3EG4 A; 5AFU V; 3BXY A; 3R3R A; 3R1W A; 3VBN A; 4CVM A; 3FS8 A; 1FWY A; 4J18 A; 1QRG A; 2ICX A; 1KK6 A; 2OI5 A; 4K6R A; 3GQ9 A; 3R5A A; 4J09 A; 2V0L A; 4HZC A; 1Z2F A; 2VD4 A; 3FSX A; 4E79 A; 2YYB A; 3TDT A; 1MR9 A; 3R8Y A; 3T57 A; 2IU8 A; 1THJ A; 3EH0 A; 4IWG A; 3BSS A; 1KK5 A; 1KRR A; 3TV0 A; 4KQL A; 3VBL A; 4EQY A; 3V4E A; 1Z90 A; 2WLE A; 3BFP A; 3DHO A; 4G3S A; 3BSW A; 1G95 A; 1LXA A; 3OH0 A; 3DK5 A; 1QQ0 A; 4N6B A; 5DEP A; 5F42 A; 2V0H A; 1V67 A; 3OH3 A; 3VBP A; 4G87 A; 1KQA A; 3CJ8 A; 3VBJ A; 3ZM6 A; 3DJ4 A; 2WTZ A; 3PMO A; 2WLG A; 4MYO A; 5DEM A; 3FOQ A; 3HSQ A; 3L31 A; 3R5D A; 3TK8 A; 3SRT A; 3VBK A; 4AA7 A; 4DCL A; 5ADX V; 4KPZ A; 4IHG A; 2WLD A; 2XJA A; 3IGJ A; 3R5B A; 4FCE A; 4EA9 A; 2JF2 A; 2OI7 A; 3FSY A; 3R0S A; 2TDT A; 1QRE A; 1T3D A; 1J2Z A; 3BSY A; 3P1B A; 4HCQ A; 4E6U A; 1KNX A; 1KRU A; 3WSG A; 2V0I A; 2WLC A; 4IWM A; 1KRV A; 5U2K A; 1KK4 A; 3WSI A; 3WSH A; 4QDI A; 1QRF A; 2VHE A; 1QRM A; 1XAT A; 3ZM5 A; 2W0W A; 3R2W A; 4EAB A; 3ZL8 A; 2FKO A; 1N4I A; 3TIO A; 1KHR A; 3ECT A; 3GUE A; 4N27 A; 3C8V A; 5E3R A; 1NMP A; 2OEF A; 1S80 A; 4R36 A; 1SST A; 1SSQ A; 1YP4 A; 2Q4J A; 3OW5 A; 1SSM A; 4HZD A; 3JQY A; 4M28 A; 3I3A A; 3MQH A; 4N6A A; 3VNP A; 1KGQ A; 3GVD A; 3D98 A; 3IXC A; 2IOJ A; 2AM2 A; 1QRL A; 4R37 A; 1L0S A; 1FXJ A; 3BRK X; 1YP2 A; #chains in the Genus database with same CATH homology 5DG3 A; 2V0K A; 2OEG A; 3FWW A; 3OU9 A; 4IHF A; 2ICY A; 4KPX A; 4M9C A; 4EA7 A; 3I3X A; 2IC7 A; 3ST8 A; 5AFU U; 3TIS A; 3FSB A; 1HM9 A; 4KNX A; 1MRL A; 3FTT A; 3MQG A; 2QKX A; 4AC3 A; 4EGG A; 2QIV X; 3P47 A; 3R3I A; 4HUR A; 4N69 A; 4R7P A; 1HM0 A; 2QIA A; 3GOS A; 5L6S A; 1OCX A; 2AM1 A; 2XAT A; 1XHD A; 3KWE A; 4EA8 A; 4AAW A; 2V0J A; 4BUB A; 1TDT A; 3VBI A; 3VBM A; 4G3Q A; 2IU9 A; 1G97 A; 3TWD A; 3D8V A; 4E1K A; 2I5K A; 2JF3 A; 3NZ2 A; 2AQ9 A; 4H7O A; 2OI6 A; 4IHH A; 3F1X A; 3OTZ A; 4E6T A; 1MR7 A; 2RIJ A; 4M99 A; 2GGO A; 3MC4 A; 3Q1X A; 4G3P A; 4M2B A; 4KNR A; 1GG4 A; 4ZIY A; 1HV9 A; 2P2O A; 3OUP A; 5ADX U; 4CVL A; 2W0V A; 4ISX A; 4M98 A; 2IUA A; 1E8C A; 1YP3 A; 5E3P A; 1KGT A; 3KWC A; 3FSC A; 4CVK A; 1V3W A; 4MZU A; 4E75 A; 4EAA A; 4HUS A; 4C13 A; 2NPO A; 2WLF A; 3R5C A; 4C12 A; 5L6V A; 2GGQ A; 4M2A A; 5E3Q A; 3KWD A; 3SPT A; 4QF5 A; 4MFG A; 3HJJ A; 3EEV A; 1HM8 A; 3OTM A; 3EG4 A; 5AFU V; 3BXY A; 3R3R A; 3R1W A; 3VBN A; 4CVM A; 3FS8 A; 1FWY A; 4J18 A; 1QRG A; 2ICX A; 1KK6 A; 2OI5 A; 4K6R A; 3R5A A; 4J09 A; 2V0L A; 4HZC A; 3FSX A; 2VD4 A; 4E79 A; 3TDT A; 1MR9 A; 3R8Y A; 3T57 A; 2IU8 A; 1THJ A; 3EH0 A; 3BSS A; 1KK5 A; 1KRR A; 3TV0 A; 4KQL A; 3VBL A; 4EQY A; 3V4E A; 1Z90 A; 2WLE A; 3BFP A; 3DHO A; 4G3S A; 3BSW A; 1G95 A; 1LXA A; 3DK5 A; 1QQ0 A; 4N6B A; 5DEP A; 5F42 A; 2V0H A; 1V67 A; 3VBP A; 4G87 A; 1KQA A; 3CJ8 A; 3VBJ A; 3ZM6 A; 3DJ4 A; 2WTZ A; 3PMO A; 2WLG A; 4MYO A; 5DEM A; 3FOQ A; 3HSQ A; 3R5D A; 3TK8 A; 3SRT A; 3VBK A; 4AA7 A; 4DCL A; 5ADX V; 4KPZ A; 4IHG A; 2WLD A; 2XJA A; 3IGJ A; 3R5B A; 4FCE A; 4EA9 A; 2JF2 A; 2OI7 A; 3FSY A; 3R0S A; 2TDT A; 1QRE A; 1T3D A; 1J2Z A; 3BSY A; 3P1B A; 4HCQ A; 4E6U A; 1KRU A; 2V0I A; 2WLC A; 1KRV A; 5U2K A; 1KK4 A; 4QDI A; 1QRF A; 2VHE A; 1QRM A; 1XAT A; 3ZM5 A; 2W0W A; 3R2W A; 4EAB A; 3ZL8 A; 2FKO A; 3TIO A; 1KHR A; 3ECT A; 3GUE A; 4N27 A; 3C8V A; 5E3R A; 2OEF A; 1S80 A; 4R36 A; 1SST A; 1SSQ A; 1YP4 A; 2Q4J A; 3OW5 A; 1SSM A; 4HZD A; 3JQY A; 4M28 A; 3I3A A; 3MQH A; 4N6A A; 3VNP A; 1KGQ A; 3GVD A; 3D98 A; 3IXC A; 2AM2 A; 1QRL A; 4R37 A; 1FXJ A; 3BRK X; 1YP2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
