The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
104
|
sequence length |
341
|
structure length |
341
|
Chain Sequence |
b'MASIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
|
| publication title |
Crystal structure and acyl chain selectivity of Escherichia coli LpxD, the N-acyltransferase of lipid A biosynthesis
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| molecule tags |
Transferase
|
| total genus |
104
|
| structure length |
341
|
| sequence length |
341
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
2.3.1.191: UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase. |
| pdb deposition date | 2008-09-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00132 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
| A | PF04613 | LpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD |
| A | PF14602 | Hexapep_2 | Hexapeptide repeat of succinyl-transferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 | MurE/MurF, N-terminal domain |
#chains in the Genus database with same CATH superfamily 2V0K A; 4MZU A; 2OI6 A; 3R8Y A; 4J18 A; 2JF3 A; 1G97 A; 2OI5 A; 3FSX A; 4CVL A; 3ST8 A; 3VNP A; 3BRK X; 5L6V A; 4EQY A; 2QIV X; 4R36 A; 4E79 A; 4N6B A; 4H7O A; 4EA7 A; 3Q1X A; 3DHO A; 4QDI A; 1YP3 A; 3R1W A; 1J2Z A; 3MC4 A; 3R5C A; 3R5B A; 1LXA A; 2OEG A; 1HV9 A; 5AFU V; 3GUE A; 4C12 A; 1TDT A; 1HM8 A; 1SST A; 1KHR A; 3EG4 A; 5L6S A; 4HZD A; 3VBP A; 4R37 A; 1V67 A; 4M2B A; 2ICX A; 5AFU U; 3F1X A; 1KGQ A; 3IGJ A; 4J09 A; 2QKX A; 3OUP A; 4M2A A; 3VBL A; 2V0I A; 3BSS A; 3FS8 A; 4FCE A; 2IU8 A; 1G95 A; 3BXY A; 5E3P A; 1HM0 A; 1KQA A; 2OI7 A; 3TWD A; 3V4E A; 2V0L A; 3P47 A; 4G3S A; 4E1K A; 4QF5 A; 4E75 A; 4G3Q A; 3I3X A; 1KK5 A; 2GGO A; 4AA7 A; 2VHE A; 4MYO A; 3BSW A; 3R5A A; 3DK5 A; 2XAT A; 3TV0 A; 3OTZ A; 2WLF A; 3OTM A; 1E8C A; 5F42 A; 4M98 A; 4KPZ A; 3MQG A; 1SSM A; 3D8V A; 1QRM A; 1QRL A; 3VBJ A; 4EGG A; 2W0W A; 3HSQ A; 4M9C A; 4HCQ A; 4N27 A; 2V0H A; 3VBN A; 4CVM A; 3TDT A; 3IXC A; 3OW5 A; 4M28 A; 4KPX A; 2WLD A; 2Q4J A; 1S80 A; 1THJ A; 2P2O A; 1KRR A; 3R0S A; 4M99 A; 4G87 A; 4AAW A; 2WLC A; 4C13 A; 3HJJ A; 3KWC A; 1KRU A; 3ZL8 A; 1MR7 A; 1MR9 A; 2JF2 A; 3BFP A; 3GVD A; 2I5K A; 4ZIY A; 2IUA A; 4E6U A; 2WLE A; 1FWY A; 5E3Q A; 1QRG A; 2V0J A; 5DEM A; 2RIJ A; 3D98 A; 3GOS A; 4IHH A; 2TDT A; 1MRL A; 3R2W A; 3EH0 A; 1QQ0 A; 1KK4 A; 1YP2 A; 1XAT A; 4G3P A; 4IHG A; 2WTZ A; 4KNR A; 3VBI A; 2NPO A; 3FWW A; 4MFG A; 5DG3 A; 5ADX V; 2WLG A; 3VBM A; 4HZC A; 3SRT A; 1QRF A; 3FOQ A; 2AQ9 A; 4EAB A; 1GG4 A; 2GGQ A; 4CVK A; 3KWD A; 2W0V A; 3SPT A; 1V3W A; 3TK8 A; 3P1B A; 3TIO A; 3FTT A; 2FKO A; 4KQL A; 4AC3 A; 4DCL A; 5ADX U; 3BSY A; 3R5D A; 1QRE A; 2IU9 A; 1KRV A; 3NZ2 A; 5E3R A; 4EA9 A; 2VD4 A; 1T3D A; 3MQH A; 3JQY A; 3TIS A; 3R3I A; 2ICY A; 3ZM6 A; 3KWE A; 3OU9 A; 1Z90 A; 3ECT A; 4KNX A; 3I3A A; 3R3R A; 4N6A A; 3EEV A; 3C8V A; 3VBK A; 1KGT A; 3DJ4 A; 1FXJ A; 2AM1 A; 2OEF A; 4BUB A; 4K6R A; 3FSC A; 1OCX A; 1KK6 A; 1HM9 A; 1SSQ A; 4HUS A; 5DEP A; 2XJA A; 3FSB A; 4HUR A; 3T57 A; 3ZM5 A; 3PMO A; 1XHD A; 4N69 A; 4EA8 A; 5U2K A; 4EAA A; 2IC7 A; 4IHF A; 4E6T A; 1YP4 A; 2AM2 A; 4ISX A; 2QIA A; 3FSY A; 3CJ8 A; 4R7P A; #chains in the Genus database with same CATH topology 1M8N A; 2V0K A; 4MZU A; 2OI6 A; 3R8Y A; 4J18 A; 2JF3 A; 1G97 A; 2OI5 A; 3FSX A; 4CVL A; 3ST8 A; 3VNP A; 3BRK X; 5L6V A; 4EQY A; 2QIV X; 4R36 A; 3OH1 A; 4E79 A; 4N6B A; 4H7O A; 4EA7 A; 3Q1X A; 3DHO A; 4QDI A; 1YP3 A; 3R1W A; 1J2Z A; 3MC4 A; 3R5C A; 3R5B A; 1LXA A; 2OEG A; 1HV9 A; 5AFU V; 3GUE A; 4C12 A; 1TDT A; 1HM8 A; 1SST A; 1KHR A; 3EG4 A; 3L31 A; 4IWM A; 5L6S A; 4HZD A; 3VBP A; 4R37 A; 1V67 A; 4M2B A; 2ICX A; 5AFU U; 3F1X A; 1KGQ A; 3IGJ A; 4J09 A; 2QKX A; 3OUP A; 4M2A A; 3VBL A; 1KO7 A; 2V0I A; 3BSS A; 3FS8 A; 4FCE A; 2IU8 A; 1G95 A; 3BXY A; 5E3P A; 1HM0 A; 1KQA A; 2OI7 A; 3OH4 A; 3TWD A; 2V0L A; 3P47 A; 4G3S A; 3V4E A; 4E1K A; 4E75 A; 3GQ8 A; 3I3X A; 4G3Q A; 1KK5 A; 2GGO A; 4AA7 A; 2VHE A; 4MYO A; 3BSW A; 3R5A A; 3DK5 A; 3OH0 A; 2XAT A; 2FYW A; 3TV0 A; 3OTZ A; 3OH2 A; 3L2B A; 2WLF A; 3GQ9 A; 3OTM A; 1E8C A; 5F42 A; 3EEQ A; 4M98 A; 4KPZ A; 3MQG A; 1SSM A; 3D8V A; 1QRM A; 3WSE A; 1QRL A; 3VBJ A; 4EGG A; 2W0W A; 3HSQ A; 4M9C A; 4HCQ A; 4N27 A; 2V0H A; 3VBN A; 4CVM A; 3TDT A; 3IXC A; 3OW5 A; 4M28 A; 4IWG A; 4KPX A; 1NMP A; 2WLD A; 2Q4J A; 1S80 A; 1THJ A; 2P2O A; 3WSD A; 1L0S A; 1KRR A; 3R0S A; 4M99 A; 4G87 A; 4AAW A; 3WSH A; 2WLC A; 4C13 A; 3HJJ A; 3KWC A; 1KRU A; 3ZL8 A; 1MR7 A; 1MR9 A; 2JF2 A; 3BFP A; 3GVD A; 1EWW A; 2I5K A; 4ZIY A; 2IUA A; 3GQA A; 2WLE A; 4E6U A; 1FWY A; 5E3Q A; 1QRG A; 2V0J A; 5DEM A; 2RIJ A; 3D98 A; 3GOS A; 4IHH A; 2TDT A; 1MRL A; 2YYB A; 3R2W A; 3EH0 A; 1QQ0 A; 1KK4 A; 1YP2 A; 1XAT A; 4G3P A; 4IHG A; 2WTZ A; 4KNR A; 3VBI A; 3WSI A; 2NPO A; 3FWW A; 4MFG A; 5DG3 A; 5ADX V; 2WLG A; 3VBM A; 4HZC A; 3OH3 A; 3SRT A; 1QRF A; 3FOQ A; 2AQ9 A; 4EAB A; 1GG4 A; 2GGQ A; 4CVK A; 3KWD A; 2W0V A; 3SPT A; 1V3W A; 3TK8 A; 3P1B A; 3TIO A; 3FTT A; 2FKO A; 4KQL A; 4AC3 A; 4DCL A; 5ADX U; 3BSY A; 3R5D A; 1QRE A; 2IU9 A; 1KRV A; 3NZ2 A; 5E3R A; 4EA9 A; 4ISX A; 2VD4 A; 3WSG A; 1T3D A; 3MQH A; 3JQY A; 3TIS A; 4QF5 A; 3R3I A; 2ICY A; 3OGZ A; 3ZM6 A; 3KWE A; 3OU9 A; 1Z90 A; 3ECT A; 4KNX A; 3I3A A; 3R3R A; 4N6A A; 3EEV A; 3C8V A; 3VBK A; 1KGT A; 3DJ4 A; 1FXJ A; 2AM1 A; 2OEF A; 4BUB A; 4K6R A; 3FSC A; 1OCX A; 1KK6 A; 1HM9 A; 1SSQ A; 4HUS A; 5DEP A; 2IOJ A; 3FSB A; 2XJA A; 4HUR A; 1N4I A; 3SUC A; 3T57 A; 3WSF A; 3PMO A; 3ZM5 A; 1XHD A; 4N69 A; 4EA8 A; 5U2K A; 4EAA A; 2IC7 A; 3GQ7 A; 4IHF A; 1YP4 A; 4E6T A; 1Z2F A; 2QIA A; 1KNX A; 2AM2 A; 3FSY A; 1NMO A; 3CJ8 A; 4R7P A; #chains in the Genus database with same CATH homology 2V0K A; 4MZU A; 2OI6 A; 3R8Y A; 4J18 A; 2JF3 A; 1G97 A; 2OI5 A; 3FSX A; 4CVL A; 3ST8 A; 3VNP A; 3BRK X; 5L6V A; 4EQY A; 2QIV X; 4R36 A; 4E79 A; 4N6B A; 4H7O A; 4EA7 A; 3Q1X A; 3DHO A; 4QDI A; 1YP3 A; 3R1W A; 1J2Z A; 3MC4 A; 3R5C A; 3R5B A; 1LXA A; 2OEG A; 1HV9 A; 5AFU V; 3GUE A; 4C12 A; 1TDT A; 1HM8 A; 1SST A; 1KHR A; 3EG4 A; 5L6S A; 4HZD A; 3VBP A; 4R37 A; 1V67 A; 4M2B A; 2ICX A; 5AFU U; 3F1X A; 1KGQ A; 3IGJ A; 4J09 A; 2QKX A; 3OUP A; 4M2A A; 3VBL A; 2V0I A; 3BSS A; 3FS8 A; 4FCE A; 2IU8 A; 1G95 A; 3BXY A; 5E3P A; 1HM0 A; 1KQA A; 2OI7 A; 3TWD A; 3V4E A; 2V0L A; 3P47 A; 4G3S A; 4E1K A; 4QF5 A; 4E75 A; 4G3Q A; 3I3X A; 1KK5 A; 2GGO A; 4AA7 A; 2VHE A; 4MYO A; 3BSW A; 3R5A A; 3DK5 A; 2XAT A; 3TV0 A; 3OTZ A; 2WLF A; 3OTM A; 1E8C A; 5F42 A; 4M98 A; 4KPZ A; 3MQG A; 1SSM A; 3D8V A; 1QRM A; 1QRL A; 3VBJ A; 4EGG A; 2W0W A; 3HSQ A; 4M9C A; 4HCQ A; 4N27 A; 2V0H A; 3VBN A; 4CVM A; 3TDT A; 3IXC A; 3OW5 A; 4M28 A; 4KPX A; 2WLD A; 2Q4J A; 1S80 A; 1THJ A; 2P2O A; 1KRR A; 3R0S A; 4M99 A; 4G87 A; 4AAW A; 2WLC A; 4C13 A; 3HJJ A; 3KWC A; 1KRU A; 3ZL8 A; 1MR7 A; 1MR9 A; 2JF2 A; 3BFP A; 3GVD A; 2I5K A; 4ZIY A; 2IUA A; 4E6U A; 2WLE A; 1FWY A; 5E3Q A; 1QRG A; 2V0J A; 5DEM A; 2RIJ A; 3D98 A; 3GOS A; 4IHH A; 2TDT A; 1MRL A; 3R2W A; 3EH0 A; 1QQ0 A; 1KK4 A; 1YP2 A; 1XAT A; 4G3P A; 4IHG A; 2WTZ A; 4KNR A; 3VBI A; 2NPO A; 3FWW A; 4MFG A; 5DG3 A; 5ADX V; 2WLG A; 3VBM A; 4HZC A; 3SRT A; 1QRF A; 3FOQ A; 2AQ9 A; 4EAB A; 1GG4 A; 2GGQ A; 4CVK A; 3KWD A; 2W0V A; 3SPT A; 1V3W A; 3TK8 A; 3P1B A; 3TIO A; 3FTT A; 2FKO A; 4KQL A; 4AC3 A; 4DCL A; 5ADX U; 3BSY A; 3R5D A; 1QRE A; 2IU9 A; 1KRV A; 3NZ2 A; 5E3R A; 4EA9 A; 2VD4 A; 1T3D A; 3MQH A; 3JQY A; 3TIS A; 3R3I A; 2ICY A; 3ZM6 A; 3KWE A; 3OU9 A; 1Z90 A; 3ECT A; 4KNX A; 3I3A A; 3R3R A; 4N6A A; 3EEV A; 3C8V A; 3VBK A; 1KGT A; 3DJ4 A; 1FXJ A; 2AM1 A; 2OEF A; 4BUB A; 4K6R A; 3FSC A; 1OCX A; 1KK6 A; 1HM9 A; 1SSQ A; 4HUS A; 5DEP A; 2XJA A; 3FSB A; 4HUR A; 3T57 A; 3ZM5 A; 3PMO A; 1XHD A; 4N69 A; 4EA8 A; 5U2K A; 4EAA A; 2IC7 A; 4IHF A; 4E6T A; 1YP4 A; 2AM2 A; 4ISX A; 2QIA A; 3FSY A; 3CJ8 A; 4R7P A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
