4IWGA

Crystal structure of the conserved hypothetical protein mj0927 from methanocaldococcus jannaschii (in c2221 form)
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
244
structure length
244
Chain Sequence
MKAKEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVDFLFTHHPLLKDPIRNFTGVIYKKLKILMENDIILYSAHTNLDICKNGLNDALAELYNLENPKPLYDNGLGRVGIFKGSFEEFLEITKKYIHKNPIVVKSKEVDDNFKLAVLSGYGLSQSSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGLKKFKEFLSSNLDLEIISLDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii
rcsb
molecule tags Unknown function
source organism Methanocaldococcus jannaschii
molecule keywords UPF0135 protein MJ0927
total genus 88
structure length 244
sequence length 244
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01784 NIF3 NIF3 (NGG1p interacting factor 3)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 NIF3 (NGG1p interacting factor 3)-like 4iwgA01
3.40.1390.30 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 NIF3 (NGG1p interacting factor 3)-like 4iwgA02
4IWMA 1NMOA 3WSDA 2YYBA 3WSEA 1NMPA 3WSIA 3WSHA 3WSGA 3WSFA 4IWGA 2FYWA
chains in the Genus database with same CATH superfamily
1NMOA 3WSDA 2YYBA 4E79A 4IHGA 4ZIYA 4QDIA 3WSIA 4QF5A 1GG4A 4IWGA 2IUAA 2IU8A 3ZM5A 2XJAA 1KO7A 1NMPA 3PMOA 1E8CA 4C12A 3WSEA 4C13A 4IWMA 3ZM6A 2AM1A 3EEQA 4CVMA 2IOJA 4E75A 2WTZA 3L2BA 3WSHA 3WSGA 3ZL8A 4CVKA 4IHHA 3EH0A 4IHFA 2IU9A 4BUBA 2AM2A 4CVLA 1KNXA 3L31A 3WSFA 2FYWA
chains in the Genus database with same CATH topology
4IWMA 1NMOA 3WSDA 2YYBA 3WSEA 1NMPA 3WSIA 3WSHA 3WSGA 3WSFA 4IWGA 2FYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IWM A;  1NMO A;  3WSD A;  2YYB A;  3WSE A;  1NMP A;  3WSI A;  3WSH A;  3WSG A;  3WSF A;  4IWG A;  2FYW A; 
#chains in the Genus database with same CATH topology
 1NMO A;  3WSD A;  2YYB A;  4E79 A;  4IHG A;  4ZIY A;  4QDI A;  3WSI A;  4QF5 A;  1GG4 A;  4IWG A;  2IUA A;  2IU8 A;  3ZM5 A;  2XJA A;  1KO7 A;  1NMP A;  3PMO A;  1E8C A;  4C12 A;  3WSE A;  4C13 A;  4IWM A;  3ZM6 A;  2AM1 A;  3EEQ A;  4CVM A;  2IOJ A;  4E75 A;  2WTZ A;  3L2B A;  3WSH A;  3WSG A;  3ZL8 A;  4CVK A;  4IHH A;  3EH0 A;  4IHF A;  2IU9 A;  4BUB A;  2AM2 A;  4CVL A;  1KNX A;  3L31 A;  3WSF A;  2FYW A; 
#chains in the Genus database with same CATH homology
 4IWM A;  1NMO A;  3WSD A;  2YYB A;  3WSE A;  1NMP A;  3WSI A;  3WSH A;  3WSG A;  3WSF A;  4IWG A;  2FYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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