1TFE | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	142
structure length	142
Chain Sequence	AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 142 atoms

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142 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Elongation factor
source organism	Thermus thermophilus
publication title	Structure and importance of the dimerization domain in elongation factor Ts from Thermus thermophilus. pubmed doi rcsb
molecule keywords	ELONGATION FACTOR TS
total genus	49
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	1996-04-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.20	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	GTP Cyclohydrolase I; Chain A, domain 1	1tfeA02
3.30.479.20	Alpha Beta	2-Layer Sandwich	Tetrahydropterin Synthase; Chain A	Elongation factor Ts, dimerisation domain	1tfeA01

4Q7JA 3BMBA 1TFEA 1EFUB 1AIPC 2PN0A 1XB2B
chains in the Genus database with same CATH superfamily

1IS7A 2WSCK 3QNAA 4Q7JA 1WM9A 2DTTA 2OBAA 4DRAE 4E45B 4NE6B 1Y13A 1AIPC 4QPMA 2WSEK 4FVJA 3I2BA 1WPLA 4FVGA 4NTKA 3D7JA 1N3SA 1EL6A 2DJ6A 2G64A 3LZEA 5DMZA 1WURA 2A0SA 3LW5G 1XB2B 1EFUB 1TFEA 2LNZA 1A8RA 1B66A 3M0NA 4NTMA 4FVFA 2KR1A 1GTPA 1N3TA 3JYGA 3QN9A 4DRBJ 3BMBA 1FBXA 2O01G 4NE5B 3LW5K 3VEJA 4E44B 1A9CA 3QN0A 1WUQA 4DU6A 4R8QA 4NTNA 3BK6A 1IS8A 2WSFG 1FB1A 2P11A 4NE3B 2RPBA 2WSCG 1B6ZA 1GTQA 1N3RA 2LO0A 2PN0A 3B0BC 2WSEG 4JA3A 2WSFK 3LX3A 1WINA
chains in the Genus database with same CATH topology

1IS7A 4Q7JA 1WM9A 4DRAE 4E45B 4NE6B 1AIPC 4QPMA 1WPLA 1N3SA 1EL6A 5DMZA 1WURA 1XB2B 1EFUB 1TFEA 2LNZA 1A8RA 2KR1A 1GTPA 1N3TA 4DRBJ 3BMBA 1FBXA 3VEJA 4NE5B 4E44B 1A9CA 1WUQA 4DU6A 4R8QA 1IS8A 1FB1A 2P11A 4NE3B 1N3RA 2LO0A 2PN0A 3B0BC 4JA3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4Q7J A;  3BMB A;  1TFE A;  1EFU B;  1AIP C;  2PN0 A;  1XB2 B; 
#chains in the Genus database with same CATH topology
 1IS7 A;  2WSC K;  3QNA A;  4Q7J A;  1WM9 A;  2DTT A;  2OBA A;  4DRA E;  4E45 B;  4NE6 B;  1Y13 A;  1AIP C;  4QPM A;  2WSE K;  4FVJ A;  3I2B A;  1WPL A;  4FVG A;  4NTK A;  3D7J A;  1N3S A;  1EL6 A;  2DJ6 A;  2G64 A;  3LZE A;  5DMZ A;  1WUR A;  2A0S A;  3LW5 G;  1XB2 B;  1EFU B;  1TFE A;  2LNZ A;  1A8R A;  1B66 A;  3M0N A;  4NTM A;  4FVF A;  2KR1 A;  1GTP A;  1N3T A;  3JYG A;  3QN9 A;  4DRB J;  3BMB A;  1FBX A;  2O01 G;  4NE5 B;  3LW5 K;  3VEJ A;  4E44 B;  1A9C A;  3QN0 A;  1WUQ A;  4DU6 A;  4R8Q A;  4NTN A;  3BK6 A;  1IS8 A;  2WSF G;  1FB1 A;  2P11 A;  4NE3 B;  2RPB A;  2WSC G;  1B6Z A;  1GTQ A;  1N3R A;  2LO0 A;  2PN0 A;  3B0B C;  2WSE G;  4JA3 A;  2WSF K;  3LX3 A;  1WIN A; 
#chains in the Genus database with same CATH homology
 1IS7 A;  4Q7J A;  1WM9 A;  4DRA E;  4E45 B;  4NE6 B;  1AIP C;  4QPM A;  1WPL A;  1N3S A;  1EL6 A;  5DMZ A;  1WUR A;  1XB2 B;  1EFU B;  1TFE A;  2LNZ A;  1A8R A;  2KR1 A;  1GTP A;  1N3T A;  4DRB J;  3BMB A;  1FBX A;  3VEJ A;  4NE5 B;  4E44 B;  1A9C A;  1WUQ A;  4DU6 A;  4R8Q A;  1IS8 A;  1FB1 A;  2P11 A;  4NE3 B;  1N3R A;  2LO0 A;  2PN0 A;  3B0B C;  4JA3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1TFEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN